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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGTGGCATGCCCTCGTTGTTGTAATAAGCAATGCATCAGAACTTCAAGGATATTCAGTGAGGTTATTATACATGGCTCTACAAGCATTTGTCGATCAGgtttggaaaaaaaaatgtgtttgttatgatgcatattgttccaccttaacctaactgatttgtgtaacttggttgcactacactgtgtag

Basic information

species Oryza sativa
transcript LOC_Os02g56110.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g56110.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G054210_T01 (Zea mays), 5'ss of exon 10
TGTGTGGCATGCCCTCGTTGTTGTAATAAGCAATGCATCAGAACTTCAAGGATATTCAGTGAGGTTATTATACATGGCTCTACAAGCATTTGTCGATCAGgtttggaaaaaaaaatgtgtttgttatgatgcatattgttccaccttaacctaactgatttgtgtaacttggttg-cactacactgtgtag
  | || ||||||||  |||||||| |||| ||| ||||||| |||||||||||||||||||||| ||| || | |||  |||||| || ||   | |||||| ||  |||    | | |   |    ||||||    ||||| || | ||||  ||||   ||||||   ||    | || | ||  |||
CATATGTCATGCCCTTATTGTTGTACTAAGTAATACATCAGAGCTTCAAGGATATTCAGTGAGGTCATTGTATAAGGCCTTACAAGAATATGGTAAACAGgttaggggaaag---tttatac-tctccatgcattccattccatctcatcctacttgatgcctgtaacactgtcaatattataatgattag

upper sequence: LOC_Os02g56110.1 (Oryza sativa), 5'ss of exon 10
lower sequence: AT1G23900.2 (Arabidopsis thaliana), 5'ss of exon 10
TGTGTGGCATGCCCTCGTTGTTGTAATAAGCAATGCATCAGAACTTCAAGGATATTCAGTGAGGTTATTATACATGGCTCTACAAGCATTTGTCGATCAGgtttggaaaaaaaaatgtgtttgttatgatgcatattgttccaccttaacctaactga---tttgtgtaacttggttgcactacactgtgtag----
|||||||||||| ||  ||||||| ||||||||||||||||| ||||| |||||| |||| |||   || ||||         || || |  |   | |  || |||| |   |     ||| | ||| |  ||  || ||   | | |   |  ||      | | |||  ||||| |  |    ||  ||     
TGTGTGGCATGCACTTATTGTTGTCATAAGCAATGCATCAGAGCTTCATGGATATACAGTTAGGGCCTTGTACA---------AATCAGTCTTGACTTA--TTCGGAACAGgtagctattttctaatgttagattgtgctcagtcctcaatcagttgtaaccctttctaatatggtttcgttgagatg-ataaccag

upper sequence: LOC_Os02g56110.1 (Oryza sativa), 5'ss of exon 10
lower sequence: Vv01s0026g00310.t01 (Vitis vinifera), 5'ss of exon 10
TGTGTGGCATGCCCTCGTTGTTGTAATAAGCAATGCATCAGAACTTCAAGGATATTCAGTGAGGTTATTATACATGGCTCTACAAGCATTTGTCGATCAGgtttggaaa------aaaaaatgtgtttgttatgatgcatattgttccacct--taacctaactg-atttgtgtaacttggttgcact-acactgtgtag
 || |||||||||||  ||||||||||||||||||| || || || || |||||| |||| ||||   | ||||  ||  | |||||||  || || ||||| || |        |  ||||     |  |    | | |   |  | |  |  ||    || || |  ||  |   ||  ||   |  | ||  |||| 
AGTCTGGCATGCCCTTATTGTTGTAATAAGCAATGCTTCTGACCTCCATGGATATACAGTAAGGTCCCTTTACAGAGCATTCCAAGCATCAGTGGAACAGgtatgcaggtttaatatgaaatcctaatacttgagtacctgggggcctatttggtagtggaaatgtaaatgccttttttctttttccagaaacaatgtat