1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AACTCAGTTTGCTCCATTGCTTGGTGGTTATGGTTCCAGTTTGGTGGATCCGCGTGGAAAGCTTGTCGCTCGTTCGTTTGATATTTTAGgtgatgtagccttttcccttcaggattcactgaaggtcccagtttactcattgcctgatataatttctgcag
species | Oryza sativa |
transcript | LOC_Os02g54000.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TTTGGTGGATCCGCGTGTAAAGCTTGTCGCTCGTTCGTTTGATATTTTAG GCTTGTATTCAACTTTTGTTTTCCAGAAGCCTGACCCAGATGCAATGCCACEST: gi|6431606|gb|AU081258.1|AU081258
genomic: TTTGGTGGATCCGCGTGGAAAGCTTGTCGCTCGTTCGTTTGATATTTTAGgtgatgtagc ... atttctgcagGCTTGTATTCAACTTTTGTTTTCCAGAAGCCTGACCCAGATGCAATGCCAC
EST: TTTGGTGGATCCGCGTGGAAAGCTTGTCGCTCGTTCGTTTGATATTTTAG GCTTGTATTCAACTTTTGTTTTCCAGAAGCCTGACCCAGATGCAATGCCACEST: gi|88228791|gb|CI228271.1|CI228271
genomic: TTTGGTGGATCCGCGTGGAAAGCTTGTCGCTCGTTCGTTTGATATTTTAGgtgatgtagc ... atttctgcagGCTTGTATTCAACTTTTGTTTTCCAGAAGCCTGACCCAGATGCAATGCCAC
EST: TTTGGTGGATCCGCGTGGAAAGCTTGTCGCTCGTTCGTTTGATATTTTAG GCTTGTATTCAACTTTTGTTTTCCAGAAGCCTGACCCAGATGCAATGCCACEST: gi|89197193|gb|CI051923.1|CI051923
genomic: TTTGGTGGATCCGCGTGGAAAGCTTGTCGCTCGTTCGTTTGATATTTTAGgtgatgtagc ... atttctgcagGCTTGTATTCAACTTTTGTTTTCCAGAAGCCTGACCCAGATGCAATGCCAC
EST: CCGCGTGGAAAGCTTGTCGCTCGTTCGTTTGATATTTTAG GCTTGTATTCAACTTTTGTTTTCCAGAAGCCTGACCCAGATGCAATGCCACEST: gi|88271658|gb|CI387711.1|CI387711
genomic: CCGCGTGGAAAGCTTGTCGCTCGTTCGTTTGATATTTTAGgtgatgtagc ... atttctgcagGCTTGTATTCAACTTTTGTTTTCCAGAAGCCTGACCCAGATGCAATGCCAC
EST: TTTGGTGGATCCGCGTGGAAAGCTTGTCGCTCGTTCGTTTGATATTTTAG GCTTGTATTCAACTTTTGTTTTCCAGAAGCCTGACCCAGATGCAATGCCAC
genomic: TTTGGTGGATCCGCGTGGAAAGCTTGTCGCTCGTTCGTTTGATATTTTAGgtgatgtagc ... atttctgcagGCTTGTATTCAACTTTTGTTTTCCAGAAGCCTGACCCAGATGCAATGCCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACTCAGTTTGCTCCATTGCTTGGTGGTTATGGTTCCAGTTTGGTGGATCCGCGTGGAAAGCTTGTCGCTCGTTCGTTTGATATTTTAGgtgatgtagccttttcccttcaggattcactgaaggtcccagtttactcattgcctgatataatttctgcag
- - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - GGTGGA