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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTTTTTTCCTCAGAATGAGGTGAAACAGATTCAGACACCTTTGTTCATTCTCAACGCAGCGTATGATTCCTGGCAGgttatcatctgatccacgttctgcaatacttctatgattatgatccttttagtgttgcccttagataaatatgctttgtagtggcatatgttttggcattgtggctgtgtacatccgatttggatgtagaggccagactttaatccattttctaaaaatatgttttggcattaatttaggtctcgtgtgttacag

Basic information

species Oryza sativa
transcript LOC_Os02g47400.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g47400.1 (Oryza sativa), 5'ss of exon 10
lower sequence: AC204604.3_FGT008 (Zea mays), 5'ss of exon 2
TGCTTTTTTCCTCAGAATGAGGTGAAACAGATTCAGACACCTTTGTTCATTCTCAACGCAGCGTATGATTCCTGGCAGgttatcatctgatccacgttctgcaa-tacttctatgattatgatcctt--ttagtgttg--cccttagataaatatgctttgtagtggcatatgttttggcattgtggctgtgtacatccgatttggatgtagaggccagactttaatccattttctaaaaatatgttttggcattaatttaggtctcgtgtgttacag
|||||||| || ||||| |||||||||||||| ||||||||| ||||||| ||||||||||| |||||||| ||||||||||||||  ||     |||| | || |     ||||  | || |||||  ||| ||  |  | ||  | |     ||   | |||   || || ||||      |                                                                                              
TGCTTTTTCCCCCAGAACGAGGTGAAACAGATACAGACACCTCTGTTCATCCTCAACGCAGCATATGATTCATGGCAGgttatcattcgag--gagttccgtaactgtaaatatgggtgtgttccttaattattgcggatctctctggtgctgctgtcatatag-aacacatttttttctgcag----------------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58684177|gb|CK072864.1|CK072864
EST:     AGATTCAGACACCTTTGTTCATTCTCAACGCAGCGTATGATTCCTGGCAG                         GTAAGGAACATCTTGGTGCCAGGATTTGCAGACCCTCATGGTAAATGGCAT
genomic: AGATTCAGACACCTTTGTTCATTCTCAACGCAGCGTATGATTCCTGGCAGgttatcatct ... tgtgttacagGTAAGGAACATCTTGGTGCCAGGATTTGCAGACCCTCATGGTAAATGGCAT