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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCTTAAAGCTACAAGACAAGGGGAGACAATCAACATTTTCTCTGTTGCTTCTGGGCATCTgtaagtgcccattgtccatgtctattactctacttcttagctacttctattgcccattgtcattctctttggatctttatgtcgtttctggtgtttctta...

Basic information

species Oryza sativa
transcript LOC_Os02g44510.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g44510.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM5G846198_T01 (Zea mays), 5'ss of exon 3
GACCTTAAAGCTACAAGACAAGGGGAGACAATCAACATTTTCTCTGTTGCTTCTGGGCATCTgtaagtgcccattgtccatgtctattactctacttcttagctacttctattgcccattgtcattctctttggatctttatgtcgtt-tctggtgtttctta------
|||| ||| | | ||||||||||||| || || || || |||||||||||||||||||||||||| ||  ||||| |    ||  |  | |||   |||   |||  |   ||     || |  ||||      |     | |  | | ||  | |||| ||       
GACCGTAAGGATGCAAGACAAGGGGAAACCATAAATATATTCTCTGTTGCTTCTGGGCATCTgtatgtctccatt-taggggttgacaagtct-tgtctctcctatgttcttt-----tttttcttcttaaaaaaatgacacgcagctctcctgcgtttgttcaaaaaa

upper sequence: LOC_Os02g44510.1 (Oryza sativa), 5'ss of exon 10
lower sequence: EFJ07070 (Selaginella moellendorffii), 5'ss of exon 27
GACCTTAAAGCTACAAGACAAGGGGAGACAATCAACATTTTCTCTGTTGCTTCTGGGCATCTgtaagtgcccattgtccatgtctattactctacttcttagctacttctattgcccattgtcattctctttggatctttatgtcgtttctggtgtttctta
             | || || || || || |||||||||||||| ||||| || ||||||||||||||      |||     |         | ||          ||  |                                                   
-------------CGAGGCATGGTGAAACCATCAACATTTTCTCGGTTGCGTCGGGGCATCTgtaagtcttagatgtttgaatgatccgactttctcacagaaggtttgcag--------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58658861|gb|CK047541.1|CK047541
EST:     GCAAGACAAGGGGAGACAATCAACATTTTCTCTGTTGCTTCTGGGCATCT                         GTATGAACGTTTCCTCAAGATAATGATTTTGAGTGTATTAAAGCAAACACA
genomic: ACAAGACAAGGGGAGACAATCAACATTTTCTCTGTTGCTTCTGGGCATCTgtaagtgccc ... tctgttgcagGTATGAACGTTTCCTCAAGATAATGATTTTGAGTGTATTAAAGCAAACACA
EST: gi|58609426|gb|CK037459.1|CK037459
EST:     AGGGGAGACAATCAACATTTTCTCTGTTGCTTCTGGGCATCT                         GTATGAACGTTTCCTCGAGATAATGATTTTGAGTGTATTAAAGCAAACACA
genomic: AGGGGAGACAATCAACATTTTCTCTGTTGCTTCTGGGCATCTgtaagtgccc ... tctgttgcagGTATGAACGTTTCCTCAAGATAATGATTTTGAGTGTATTAAAGCAAACACA
EST: gi|58654435|gb|CK043115.1|CK043115
EST:     GCAAGACAAGGGGAGACAATCAACATTTTCTCTGTTGCTTCTGGGCATCT                         GTATGAACGTTTCCTCAAGATAATGATTTTGAGTGTAT
genomic: ACAAGACAAGGGGAGACAATCAACATTTTCTCTGTTGCTTCTGGGCATCTgtaagtgccc ... tctgttgcagGTATGAACGTTTCCTCAAGATAATGATTTTGAGTGTAT
EST: gi|29624544|gb|CB629555.1|CB629555
EST:     GCAAGACAAGGGGAGACAATCAACATTTTCTCTGTTGCTTCTGGGCATCT                         GTATGAACGTTTCCTCAAGATAATGATTTTGAGTGTATTAAAGCAAACACA
genomic: ACAAGACAAGGGGAGACAATCAACATTTTCTCTGTTGCTTCTGGGCATCTgtaagtgccc ... tctgttgcagGTATGAACGTTTCCTCAAGATAATGATTTTGAGTGTATTAAAGCAAACACA
EST: gi|33794022|gb|CF322901.1|CF322901
EST:     ACAAGACAAGGGGAGACAATCAACATTTTCTCTGTTGCTTCTGGGCATCT                         GTATGAACGTTTCCTCAAGATAATGATTTTGAGTGTATTAAAGCAAACACA
genomic: ACAAGACAAGGGGAGACAATCAACATTTTCTCTGTTGCTTCTGGGCATCTgtaagtgccc ... tctgttgcagGTATGAACGTTTCCTCAAGATAATGATTTTGAGTGTATTAAAGCAAACACA
EST: gi|58689586|gb|CK078273.1|CK078273
EST:     GCAAGACAAGGGGAGACAATCAACATTTTCTCTGTTGCTTCTGGGCATCT                         GTATGAACGTTTCCTCAAGATAATGATTTTGAGTGTATTAAAGCAAACACA
genomic: ACAAGACAAGGGGAGACAATCAACATTTTCTCTGTTGCTTCTGGGCATCTgtaagtgccc ... tctgttgcagGTATGAACGTTTCCTCAAGATAATGATTTTGAGTGTATTAAAGCAAACACA