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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGTGGACTACATCTTCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAGgtaactattcatctctcttctttagacattcttttctggtgattgcgcagctgacaaattacctgtataaatttgtag

Basic information

species Oryza sativa
transcript LOC_Os02g41590.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g41590.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G540538_T01 (Zea mays), 5'ss of exon 10
GTTTGTGGACTACATCTTCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAGgtaactattcatctc-tcttctttagac-----attcttttctggtgattgcgcagctgacaaattacctgtataaatttgtag
|| ||  |||||||||||||| |||||||| || ||||  |||||||| |||||| | ||||||||||| | ||   ||    |||||||||  |     ||| |  | || |||||| |  |||||  ||||||||||   || ||||||
GTATGCTGACTACATCTTCGGCAACGAAACTGAGGCAAAGATCTTTGCCAAAGTCAGAGGATGGGAGgtgattacagattaagtcttctttactcctataattttcctttgatgattgtgttgctgattaattacctgtgataaattgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38482919|gb|CF966721.1|CF966721
EST:     TCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAG                         ACGGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
genomic: TCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAGgtaactattc ... aaatttgtagACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
EST: gi|88216132|gb|CI215981.1|CI215981
EST:     AAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAG                         ACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
genomic: AAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAGgtaactattc ... aaatttgtagACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
EST: gi|33690915|gb|CF319154.1|CF319154
EST:     TCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAG                         ACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
genomic: TCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAGgtaactattc ... aaatttgtagACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
EST: gi|87006970|gb|CI275278.1|CI275278
EST:     TCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAG                         ACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
genomic: TCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAGgtaactattc ... aaatttgtagACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
EST: gi|89167316|gb|CI252847.1|CI252847
EST:     TCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAG                         ACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
genomic: TCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAGgtaactattc ... aaatttgtagACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
EST: gi|88980836|gb|CI022526.1|CI022526
EST:     AACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAG                         ACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
genomic: AACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAGgtaactattc ... aaatttgtagACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
EST: gi|87026580|gb|CI252534.1|CI252534
EST:     TCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAG                         ACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
genomic: TCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAGgtaactattc ... aaatttgtagACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
EST: gi|88725620|gb|CI748879.1|CI748879
EST:     TCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAG                         ACTGAGAATGTNGAGGAGATCGCGTTGAAGATTTCCCCAGCTTCCATTGGC
genomic: TCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAGgtaactattc ... aaatttgtagACTGAGAATGTTGAGGAGATCGCGTTGAAGATTT-CCCAGCTTCCATTGGC
EST: gi|58600653|gb|CK011181.1|CK011181
EST:     TCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAG                         ACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
genomic: TCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAGgtaactattc ... aaatttgtagACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
EST: gi|300215864|gb|HO088490.1|HO088490
EST:     TCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAG                         ACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
genomic: TCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAGgtaactattc ... aaatttgtagACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
EST: gi|88983145|gb|CI020709.1|CI020709
EST:     TCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAG                         ACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
genomic: TCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAGgtaactattc ... aaatttgtagACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
EST: gi|86494084|gb|CI136717.1|CI136717
EST:     TCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAG                         ACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
genomic: TCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAGgtaactattc ... aaatttgtagACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
EST: gi|86511587|gb|CI154220.1|CI154220
EST:     TCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAG                         ACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
genomic: TCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAGgtaactattc ... aaatttgtagACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
EST: gi|88241191|gb|CI241040.1|CI241040
EST:     TCTGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAG                         ACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
genomic: TCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAGgtaactattc ... aaatttgtagACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
EST: gi|88995532|gb|CI022855.1|CI022855
EST:     GAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAG                         ACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
genomic: GAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAGgtaactattc ... aaatttgtagACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
EST: gi|33800932|gb|CF326339.1|CF326339
EST:     TCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAG                         ACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
genomic: TCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAGgtaactattc ... aaatttgtagACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
EST: gi|33812141|gb|CF331960.1|CF331960
EST:     AAAGTCCGTGGATGGGAG                         ACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
genomic: AAAGTCCGTGGATGGGAGgtaactattc ... aaatttgtagACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
EST: gi|88847409|gb|CI015902.1|CI015902
EST:     CTTTGCTAAAGTCCGTGGATGGGAG                         ACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
genomic: CTTTGCTAAAGTCCGTGGATGGGAGgtaactattc ... aaatttgtagACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
EST: gi|88993161|gb|CI108789.1|CI108789
EST:     CGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAG                         ACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
genomic: CGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAGgtaactattc ... aaatttgtagACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
EST: gi|38470488|gb|CF954619.1|CF954619
EST:     TCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAG                         ACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
genomic: TCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAGgtaactattc ... aaatttgtagACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
EST: gi|89199046|gb|CI253120.1|CI253120
EST:     TCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAG                         ACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
genomic: TCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAGgtaactattc ... aaatttgtagACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
EST: gi|30227286|gb|CB965178.1|CB965178
EST:     TCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAG                         ACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
genomic: TCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAGgtaactattc ... aaatttgtagACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
EST: gi|88241275|gb|CI241124.1|CI241124
EST:     TCCGTGGATGGGAG                         ACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
genomic: TCCGTGGATGGGAGgtaactattc ... aaatttgtagACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
EST: gi|88974437|gb|CI021978.1|CI021978
EST:     TCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAG                         ACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
genomic: TCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAGgtaactattc ... aaatttgtagACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
EST: gi|88852687|gb|CI008880.1|CI008880
EST:     CGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAG                         ACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
genomic: CGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAGgtaactattc ... aaatttgtagACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
EST: gi|89175912|gb|CI042933.1|CI042933
EST:     GAATCTTTGCTAAAGTCCGTGGATGGGAG                         ACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
genomic: GAATCTTTGCTAAAGTCCGTGGATGGGAGgtaactattc ... aaatttgtagACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
EST: gi|86253196|gb|CI058121.1|CI058121
EST:     TTGCTAAAGTCCGTGGATGGGAG                         ACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
genomic: TTGCTAAAGTCCGTGGATGGGAGgtaactattc ... aaatttgtagACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
EST: gi|88966149|gb|CI013025.1|CI013025
EST:     TCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAG                         ACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
genomic: TCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAGgtaactattc ... aaatttgtagACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
EST: gi|88845212|gb|CI084137.1|CI084137
EST:     GTGGATGGGAG                         ACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
genomic: GTGGATGGGAGgtaactattc ... aaatttgtagACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
EST: gi|33681208|gb|CF309447.1|CF309447
EST:     TCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAG                         ACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
genomic: TCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAGgtaactattc ... aaatttgtagACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
EST: gi|66922324|gb|CX109172.1|CX109172
EST:     TCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAG                         ACTGAGAATGTTGACGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
genomic: TCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAGgtaactattc ... aaatttgtagACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
EST: gi|33805852|gb|CF328805.1|CF328805
EST:     TCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAG                         ACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
genomic: TCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAGgtaactattc ... aaatttgtagACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
EST: gi|86601408|gb|CI253736.1|CI253736
EST:     TCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAG                         ACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
genomic: TCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAGgtaactattc ... aaatttgtagACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
EST: gi|88844873|gb|CI022227.1|CI022227
EST:     TAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAG                         ACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
genomic: TAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAGgtaactattc ... aaatttgtagACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
EST: gi|88844636|gb|CI021211.1|CI021211
EST:     TCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAG                         ACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
genomic: TCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAGgtaactattc ... aaatttgtagACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
EST: gi|88992803|gb|CI035765.1|CI035765
EST:     CCGTGGATGGGAG                         ACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
genomic: CCGTGGATGGGAGgtaactattc ... aaatttgtagACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
EST: gi|86428609|gb|CI075290.1|CI075290
EST:     CAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAG                         ACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
genomic: CAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAGgtaactattc ... aaatttgtagACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
EST: gi|89168834|gb|CI020915.1|CI020915
EST:     AACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAG                         ACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
genomic: AACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAGgtaactattc ... aaatttgtagACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
EST: gi|38473896|gb|CF958028.1|CF958028
EST:     TCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAG                         ACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
genomic: TCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAGgtaactattc ... aaatttgtagACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
EST: gi|33681078|gb|CF309317.1|CF309317
EST:     AAAGTCCGTGGATGGGAG                         ACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
genomic: AAAGTCCGTGGATGGGAGgtaactattc ... aaatttgtagACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
EST: gi|88241182|gb|CI241031.1|CI241031
EST:     CCGTGGATGGGAG                         ACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
genomic: CCGTGGATGGGAGgtaactattc ... aaatttgtagACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
EST: gi|88225942|gb|CI225858.1|CI225858
EST:     TTGCTAAAGTCCGTGGATGGGAG                         ACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
genomic: TTGCTAAAGTCCGTGGATGGGAGgtaactattc ... aaatttgtagACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
EST: gi|33654124|gb|CF276738.1|CF276738
EST:     GGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAG                         ACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
genomic: GGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAGgtaactattc ... aaatttgtagACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
EST: gi|88904132|gb|CI006365.1|CI006365
EST:     TCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAG                         ACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
genomic: TCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAGgtaactattc ... aaatttgtagACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
EST: gi|88974187|gb|CI002806.1|CI002806
EST:     TCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAG                         ACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
genomic: TCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAGgtaactattc ... aaatttgtagACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
EST: gi|86427222|gb|CI072319.1|CI072319
EST:     TCCGTGGATGGGAG                         ACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC
genomic: TCCGTGGATGGGAGgtaactattc ... aaatttgtagACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 32 (upstream exon), 47 (downstream exon)
Score: 85

GTTTGTGGACTACATCTTCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAGgtaactattc ... aaatttgtagACTGAGAATGTTGAGGAGATCGCGTTGAAGATTTCCCAGCTTCCATTGGCCTCTGGAAAACAAAAGAGGATTGCCGTGATTACTCAAGGTGCTGATCCAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTTGTGGACTACATCTTCGGTAACGAAACAGAAGCAAGAATCTTTGCTAAAGTCCGTGGATGGGAGgtaactattcatctctcttctttagacattcttttctggtgattgcgcagctgacaaattacctgtataaatttgtag

- - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - GCAAGA