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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTTCTGTGAACACTGCTGCTCGGAGAGACATACTAGATATTGCTGAAATCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAGgtaattttaattttatggctaatgttgcttgtgattgttaaacttttctttattagcttaatcagcttcatttacgaagaacaccgatctatgtacaaat...

Basic information

species Oryza sativa
transcript LOC_Os02g39570.5
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g39570.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G007647_T01 (Zea mays), 5'ss of exon 10
GGTTTCTGTGAACACTGCTGCTCGGAGAGACATACTAGATATTGCTGAAATCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAGgtaattttaattttatggctaatgttgcttgtgattgttaaact--tttctttattagc-ttaatcagcttcatttacgaagaacaccgatctatgtacaaat
||||||||| ||||||||||||||||| || || ||||||||||||||||||||||| |||||| || |||| |||||||| || || || ||  | |||||    ||    | |       |||| |||   ||  ||       |  ||||   ||   | ||||   |   |   |    | |     |  |||||| | 
GGTTTCTGTAAACACTGCTGCTCGGAGGGAAATTCTAGATATTGCTGAAATCTTCCGAGCAAAACCTATTGACGTTTCTGACCATACAGTAACCCTTCAGgttcgctt--cctaacaatgtgtgtttcttccaatacttccgtcagtgcctttgccagtactgatcatactagatccggtgttagaaaaggcattgtacaca-

upper sequence: LOC_Os02g39570.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G407044_T01 (Zea mays), 5'ss of exon 10
GGTTTCTGTGAACACTGCTGCTCGGAGAGACATACTAGATATTGCTGAAATCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAGgtaattttaattttatggctaatgttgcttgtgattgttaaacttttctttattagcttaatcagcttcatttacgaagaacaccgatctatgtacaaat--
||||||||| ||||||||||||||||  || || ||||||||||||||||||||||| |||||| |||||||||||||||| ||||| || ||| | |||||     |  |   |       |||| ||      | |  | |  ||| ||   |   |   ||||  ||  |    |  |||  |   ||  |    ||  
GGTTTCTGTCAACACTGCTGCTCGGAAGGAAATCCTAGATATTGCTGAAATCTTCCGAGCAAAACCTGTTGATGTTTCTGACCACACAGTAACGCTTCAGgttggcatcctaacagtttgtgtgtttctcccagatttccatcggttcctttgcacactgcacagccacaagt-tatatcacattg-cttaaatgtttattc

upper sequence: LOC_Os02g39570.1 (Oryza sativa), 5'ss of exon 10
lower sequence: Vv00s0220g00110.t01 (Vitis vinifera), 5'ss of exon 10
GGTTTCTGTGAACACTGCTGCTCGGAGAGACATACTAGATATTGCTGAAATCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAGgtaattttaattttatggctaatgttgcttgtgattgttaaact-tttctttattagct-taatcagcttcatttacgaagaacaccgatctatgtacaaat
| || |||| |||||||||||| |||| ||  | || |||||||||   || |||||||| ||| |||||||||| |||||||||||  ||||  || |||| |   |  |||     | |||||  |||||   | |   | | | ||||||||   | || ||| |||| |  |      |  | | |||  | ||    
GATTGCTGTAAACACTGCTGCTAGGAGGGATGTTCTTGATATTGCTAGCATTTTCCGGGCCAAAGCTGTTGATGTGTCTGATCACACAATTACCCTAGAGgtgaaaatggtttacc--caaatgtctcttgttggtctagcagtatctctttatttcttatattcaccttcctgaattctataagcagttctgggcactgca

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32948361|gb|BP184933.1|BP184933
EST:     TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAG                         CTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCC
genomic: TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAGgtaattttaa ... gattgtgcagCTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCC
EST: gi|29656805|gb|CB653080.1|CB653080
EST:     TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAG                         CTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
genomic: TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAGgtaattttaa ... gattgtgcagCTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
EST: gi|58593157|gb|CF991465.1|CF991465
EST:     TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAG                         CTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT
genomic: TCTTCCGGGCAAAATCTGTTGATGTTTCTGATCACACTGTTACGTTACAGgtaattttaa ... gattgtgcagCTTACTGGGGATCTCGACAAGATGGTTGCATTACAAAGGCTGTTGGAGCCT