1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CACAAATTTGCGAACGAAGATGTATCACTTGGTTCATGGTTTATTGGTTTAGAAGTGAATCATATCGATGAAAGAAACATGTGCTGCGGGACTCCACCAGgtgcgtttcctcgatcttgaccaatgcttctcgtacacgcttccattttttcatcccttccctctaaattttgaataacaactccgcag
species | Oryza sativa |
transcript | LOC_Os02g35870.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AGAAGTGAATCATATCGATGAAAGAAACATGTGCTGCGGGACTCCACCAG ATTGCGAGTGGAAAGGACAAGCTGGCAATGTCTGTGTGGCGTCTTTCGATTEST: gi|86493252|gb|CI135885.1|CI135885
genomic: AGAAGTGAATCATATCGATGAAAGAAACATGTGCTGCGGGACTCCACCAGgtgcgtttcc ... aactccgcagATTGCGAGTGGAAAGGACAAGCTGGCAATGTCTGTGTGGCGTCTTTCGATT
EST: ATGTGCTGCGGGACTCCACCAG ATTGCGAGTGGAAAGGACAAGCTGGCAATGTCTGTGTGGCGTCTTTCGATTEST: gi|163926656|gb|EG713672.1|EG713672
genomic: ATGTGCTGCGGGACTCCACCAGgtgcgtttcc ... aactccgcagATTGCGAGTGGAAAGGACAAGCTGGCAATGTCTGTGTGGCGTCTTTCGATT
EST: AGAAGTGAATCATATCGATGAAAGAAACATGTGCTGCGGGACTCCACCAG ATTGCGAGTGGAAAGGACAAGCTGGCAATGTCTGTGTGGCGTCTTTCGATTEST: gi|163922994|gb|EG712767.1|EG712767
genomic: AGAAGTGAATCATATCGATGAAAGAAACATGTGCTGCGGGACTCCACCAGgtgcgtttcc ... aactccgcagATTGCGAGTGGAAAGGACAAGCTGGCAATGTCTGTGTGGCGTCTTTCGATT
EST: AGAAGTGAATCATATCGATGAAAGAAACATGTGCTGCGGGACTCCACCAG ATTGCGAGTGGAAAGGACAAGCTGGCAATGTCTGTGTGGCGTCTTTCGATTEST: gi|86600110|gb|CI258450.1|CI258450
genomic: AGAAGTGAATCATATCGATGAAAGAAACATGTGCTGCGGGACTCCACCAGgtgcgtttcc ... aactccgcagATTGCGAGTGGAAAGGACAAGCTGGCAATGTCTGTGTGGCGTCTTTCGATT
EST: GTGAATCATATCGATGAAAGATACATGTGCTGCGGGACTCCACCAG ATTGCGAGTGGAAAGGACAGGCTGGCAATGTCTGTGTGGCGTCTTTCGATT
genomic: GTGAATCATATCGATGAAAGAAACATGTGCTGCGGGACTCCACCAGgtgcgtttcc ... aactccgcagATTGCGAGTGGAAAGGACAAGCTGGCAATGTCTGTGTGGCGTCTTTCGATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACAAATTTGCGAACGAAGATGTATCACTTGGTTCATGGTTTATTGGTTTAGAAGTGAATCATATCGATGAAAGAAACATGTGCTGCGGGACTCCACCAGgtgcgtttcctcgatcttgaccaatgcttctcgtacacgcttccattttttcatcccttccctctaaattttgaataacaactccgcag
- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC