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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGTCTCTTTTTGATGCAATACTGATTGTTCCAATGTTTCAGATTGCTTGGACCTTTTTTTCTATTTGCACAGGATTTGTGTACTTTCAAGAATATCAAgtgagtttctgtttgtaaatattatcgtaagcatgagaatcttgtgttgctcatgataaactaagggttttggattgccttcattag

Basic information

species Oryza sativa
transcript LOC_Os02g31874.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g31874.2 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G477146_T01 (Zea mays), 5'ss of exon 10
CCTGTCTCTTTTTGATGCAATACTGATTGTTCCAATGTTTCAGATTGCTTGGACCTTTTTTTCTATTTGCACAGGATTTGTGTACTTTCAAGAATATCAAgtgagtttctgtttgtaaatattatcgtaagcatgagaatcttgtgttgc-tcatgataaactaagggttttggattgccttcattag
 |||||  | |||||||||||||||||||||||||||||||| |||||||||||||| || |||||||| ||||||||||| |||||||||||||||||||| |||| |||||||| | || |    |||  | | ||||| ||  || | |||| ||||||  | | || ||  || |     | ||
GCTGTCATTATTTGATGCAATACTGATTGTTCCAATGTTTCAAATTGCTTGGACCTTCTTCTCTATTTGTACAGGATTTGTTTACTTTCAAGAATATCAAgtaagttcctgtttgtga-taatcggataatgaagtgaatcatgcatttcctcattataaaccgatgattctgtttttctgctgtcag

upper sequence: LOC_Os02g31874.2 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G144254_T03 (Zea mays), 5'ss of exon 7
CCTGTCTCTTTTTGATGCAATACTGATTGTTCCAATGTTTCAGATTGCTTGGACCTTTTTTTCTATTTGCACAGGATTTGTGTACTTTCAAGAATATCAAgtgagtttctgtttgtaaatattatcgtaagcatgag--aatcttgtgttgctca-tgataaactaagggttttggattgccttcattag
  ||||  | |||||||||||||||||||||||||||||||| |||||||||||||| || ||||| || ||||||||||| ||||||||||||||||||||  ||| ||||||| | ||| |    |||  |  ||  |||| ||  ||||| | | | |||||  |  || ||  || |||   | ||
GTTGTCATTATTTGATGCAATACTGATTGTTCCAATGTTTCAAATTGCTTGGACCTTCTTCTCTATCTGTACAGGATTTGTTTACTTTCAAGAATATCAAgtaggttcctgtttg-agataatgggataatgaaaagtgaatcatgcattgcttaattagaaactgggtattctgtttttcctctgtcag

upper sequence: LOC_Os02g31874.2 (Oryza sativa), 5'ss of exon 10
lower sequence: GLYMA02G07510.2 (Glycine max), 5'ss of exon 11
CCTGTCTCTTTTTGATGCAATACTGATTGTTCCAATGTTTCAGATTGCTTGGACCTTTTTTTCTATTTGCACAGGATTTGTGTACTTTCAAGAATATCAAgtgagtttctgtttgtaaatattatcgtaagcatgagaatcttgtgttgctcatga-taaactaagggttttggattgccttcattag-------------------
 |||||  | ||||||||||| || |||||||| ||||||||||| || ||||| || || || || || ||||||||| | || |||||||||||||| || | || || |||      |   |  ||  ||   | | | | ||    |||||   |  |||||    ||  ||    ||  | |                    
ACTGTCATTGTTTGATGCAATTCTTATTGTTCCCATGTTTCAGATAGCATGGACTTTGTTCTCAATATGTACAGGATTTATATATTTTCAAGAATATCAGgt-acttcctcttt------aacttgatacacacaggtagcctttgcctttcatgggcactctaagaagatttaatcatattattgaagaaaactaattaaatatca

upper sequence: LOC_Os02g31874.2 (Oryza sativa), 5'ss of exon 10
lower sequence: GLYMA16G26550.1 (Glycine max), 5'ss of exon 11
CCTGTCTCTTTTTGATGCAATACTGATTGTTCCAATGTTTCAGATTGCTTGGACCTTTTTTTCTATTTGCACAGGATTTGTGTACTTTCAAGAATATCAAgtgagtttctgtttgtaaatattatcgtaagcatgagaatcttgtgttgctcatga-taaactaagggttttggattgcctt-cattag------------------
 |||||  | ||||||||||| || |||||||| |||||||||||  | ||||| || || || || || ||||||||| | || |||||||||||||| || | ||||| | |  |  || |||     |||   | | | | || |   ||||   |  |||||    ||  ||    |   |||                    
ACTGTCATTGTTTGATGCAATTCTTATTGTTCCCATGTTTCAGATAACATGGACTTTCTTCTCAATCTGTACAGGATTTATCTATTTTCAAGAATATCAGgt-actttctctct-cacttaatat-----gcacaggtagcctttgctttgcatgggcactctaagaagatttaatcatataatattgaagaaaactaattaaatac

upper sequence: LOC_Os02g31874.2 (Oryza sativa), 5'ss of exon 10
lower sequence: AT3G26670.1 (Arabidopsis thaliana), 5'ss of exon 10
CCTGTCTCTTTTTGATGCAATACTGATTGTTCCAATGTTTCAGATTGCTTGGACCTTTTTTTCTATTTGCACAGGATTTGTGTACTTTCAAGAATATCAAgtgagtttctgtttgtaaatattatcgtaagcatgagaatcttgtgttgctcatgataaactaagggttttg--gattgccttcattag----------------------------------------------------------------
  ||||||| | ||||||||| || || |||||||||||||||||||||||||| || || || || || |||||||   | ||||||||||| | ||| ||   | | |   ||   | ||| |  |     |       ||   ||      |    | || || | | |  ||||   || || |                                                                 
ATTGTCTCTATATGATGCAATTCTCATAGTTCCAATGTTTCAGATTGCTTGGACTTTCTTCTCCATCTGTACAGGATGCATTTACTTTCAAGAGTTTCAGgttcatctat---tgactacattgtgatgcttttcctctcttttctttatcttcgggctaatacggatctagatgattagtttgatcattttgtcacagaatggtgtgggtttagggatagtcgcttagataattttcttcttccttaaacag

upper sequence: LOC_Os02g31874.2 (Oryza sativa), 5'ss of exon 10
lower sequence: Vv14s0068g00780.t01 (Vitis vinifera), 5'ss of exon 10
CCTGTCTCTTTTTGATGCAATACTGATTGTTCCAATGTTTCAGATTGCTTGGACCTTTTTTTCTATTTGCACAGGATTTGTGTACTTTCAAGAATATCAAgtgagtttctgtttgtaaatattatcgtaagcatgagaatcttgtgttgctcatgataaactaagg-gttttggattgccttcattag---------------
  ||||  | ||||||||||| || |||||||| |||||||| ||||||||||| || || |||||||| ||||||||||| |||||||| |||||||| |||  | ||| | | |   |  | ||      || |||| || |||      |   |||  || |    ||||| |    || | | |               
GTTGTCATTGTTTGATGCAATTCTTATTGTTCCCATGTTTCAAATTGCTTGGACTTTCTTCTCTATTTGTACAGGATTTGTATACTTTCAGGAATATCAGgtgc-tctctctctctctct-ctctctctcttat-agaacctagtgactgaaaatttaacttaggtcaatttggctccattttacttgtgctgctcactggga