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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATCTTCTGACACACCATTAATGTCTGCGGAGAAGATGAGAGAGGCTCAAGCTCTCAGCAAAACACCATACCTTGTTTTAAGTGGCAATGCAAAATCAGGgtatgtccacagtatacttctacatccaagttcttattttaattttccttccgatgctgctttttaaattattttgatgtcttccaaggccttaatggaa...

Basic information

species Oryza sativa
transcript LOC_Os02g30730.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g30730.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G109284_T01 (Zea mays), 5'ss of exon 11
TATCTTCTGACACACCATTAATGTCTGCGGAGAAGATGAGAGAGGCTCAAGCTCTCAGCAAAACACCATACCTTGTTTTAAGTGGCAATGCAAAATCAGGgtatgtccacagtatacttcta-catcca-agttcttattttaattttccttc-cgatgctgctttttaaattattttgatgtcttccaaggccttaatggaa
 ||||||||||||||||||| || | ||||| |||||||||||||||||| |||  |   |||||||||||||  |||||||||||||||||||| |||||||||  ||||  || | | || | |||| ||||  ||||||| ||||| ||   |   ||    |   ||   | ||||  | ||   |    ||| |    
AATCTTCTGACACACCATTATTGGCCGCGGAAAAGATGAGAGAGGCTCAATCTCGTAATCAAACACCATACCTCATTTTAAGTGGCAATGCAAAAACAGGgtatgctcacaacattcatataacctccacagtttgtattttagttttcattaatgccactagcctactaagcttgttgaattgtttacaaatgttactc---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58672868|gb|CK061554.1|CK061554
EST:     GCTCTCAGCTAAACACCATACCTTGTTTTAAGTGGCAATGCCAAATCAGG                         TCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGG
genomic: GCTCTCAGCAAAACACCATACCTTGTTTTAAGTGGCAATGCAAAATCAGGgtatgtccac ... gtgattttagTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGG
EST: gi|58679117|gb|CK067804.1|CK067804
EST:     GCTCTCAGCAAAACACCATACCTTGTTTTAAGTGGCAATGCAAAATCAGG                         TCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGG
genomic: GCTCTCAGCAAAACACCATACCTTGTTTTAAGTGGCAATGCAAAATCAGGgtatgtccac ... gtgattttagTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGG
EST: gi|38477088|gb|CF961221.1|CF961221
EST:     TGTTTTAAGTGGCAATGCAAAATCAGG                         TCAAACGACGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTG
genomic: TGTTTTAAGTGGCAATGCAAAATCAGGgtatgtccac ... gtgattttagTCAAACGA-GCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTG
EST: gi|58668329|gb|CK057015.1|CK057015
EST:     TTAAGTGGCAATGCAAAATCAGG                         TCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGG
genomic: TTAAGTGGCAATGCAAAATCAGGgtatgtccac ... gtgattttagTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGG
EST: gi|4716788|gb|AU057904.1|AU057904
EST:     GCTCTCAGCAAAACACCATACCTTGTTTTAAGTGGCAATGCAAAATCAGG                         TCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGG
genomic: GCTCTCAGCAAAACACCATACCTTGTTTTAAGTGGCAATGCAAAATCAGGgtatgtccac ... gtgattttagTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGG
EST: gi|44678577|gb|CR292011.1|CR292011
EST:     GCTCTCAGCAAAACACCATACGTTGTTTTAAGTGCCAATGCAAAATCAGG                         CCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGG
genomic: GCTCTCAGCAAAACACCATACCTTGTTTTAAGTGGCAATGCAAAATCAGGgtatgtccac ... gtgattttagTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGG
EST: gi|86478715|gb|CI121348.1|CI121348
EST:     GCTCTCAGCAAAACACCATACCTTGTTTTAAGTGGCAATGCAAAATCAGG                         TCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGG
genomic: GCTCTCAGCAAAACACCATACCTTGTTTTAAGTGGCAATGCAAAATCAGGgtatgtccac ... gtgattttagTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGG
EST: gi|29633765|gb|CB638774.1|CB638774
EST:     TAAGTGGCAATGCAAAATCAGG                         TCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGG
genomic: TAAGTGGCAATGCAAAATCAGGgtatgtccac ... gtgattttagTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGG
EST: gi|88985302|gb|CI006956.1|CI006956
EST:     TTAAGTGGCAATGCAAAATCAGG                         TCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGG
genomic: TTAAGTGGCAATGCAAAATCAGGgtatgtccac ... gtgattttagTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGG
EST: gi|27547935|gb|CA765873.2|CA765873
EST:     GCTCTCAGCAAAACACCATACCTTGTTTTAAGTGGCAATGCAAAATCAGG                         TCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGG
genomic: GCTCTCAGCAAAACACCATACCTTGTTTTAAGTGGCAATGCAAAATCAGGgtatgtccac ... gtgattttagTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGG
EST: gi|29632346|gb|CB637355.1|CB637355
EST:     GCTCTCAGCAAAACACCATACCTTGTTTTAAGTGGCAATGCAAAATCAGG                         TCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGG
genomic: GCTCTCAGCAAAACACCATACCTTGTTTTAAGTGGCAATGCAAAATCAGGgtatgtccac ... gtgattttagTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGG
EST: gi|58694197|gb|CK082884.1|CK082884
EST:     GCTCTCAGCAAAACACCATACCTTGTTTTAAGTGGCAATGCAAAATCAGG                         TCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGG
genomic: GCTCTCAGCAAAACACCATACCTTGTTTTAAGTGGCAATGCAAAATCAGGgtatgtccac ... gtgattttagTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGG