1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
AGTTACTGAGGAGAGGCCAGGCTGGTGCACTGATCCCCATCTGCCACCATGTGCAGCgtaaggggctaagggcccagaattttattgtgtatttaaatttctttgcccaaatatctgtattacattcaatttgatgtgcag
species | Oryza sativa |
transcript | LOC_Os02g19510.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GAGGAGAGGCCAGGCTGGTGCACTGATCCCCATCTGCCACCATGTGCAGC ATTTGTTGAAATCATGGCAACCGTGTTCTCTAGGGATGCATGGCGCTGTGTEST: gi|29616239|gb|CB621251.1|CB621251
genomic: GAGGAGAGGCCAGGCTGGTGCACTGATCCCCATCTGCCACCATGTGCAGCgtaaggggct ... tgatgtgcagATTTGTTGAAATCATGGCAACCGTGTTCTCTAGGGATGCATGGCGCTGTGT
EST: GAGGAGAGGCCAGGCTGGTGCACTGATCCCCATCTGCCACCATGTGCAGC ATTTGTTGAAATCATGGCAACCGTGTTCTCTAGGGATGCATGGCGCTGTGTEST: gi|29676039|gb|CB672314.1|CB672314
genomic: GAGGAGAGGCCAGGCTGGTGCACTGATCCCCATCTGCCACCATGTGCAGCgtaaggggct ... tgatgtgcagATTTGTTGAAATCATGGCAACCGTGTTCTCTAGGGATGCATGGCGCTGTGT
EST: GAGGAGAGGCCAGGCTGGTGCACTGATCCCCATCTGCCACCATGTGCAGC ATTTGTTGAAATCATGGCAACCGTGTTCTCTAGGGATGCATGGCGCTGTGTEST: gi|38475807|gb|CF959940.1|CF959940
genomic: GAGGAGAGGCCAGGCTGGTGCACTGATCCCCATCTGCCACCATGTGCAGCgtaaggggct ... tgatgtgcagATTTGTTGAAATCATGGCAACCGTGTTCTCTAGGGATGCATGGCGCTGTGT
EST: GAGGAGAGGCCAGGCTGGTGCACTGATCCCCATCTGCCACCATGTGCAGC ATTTGTTGAAATCATGGCAACCGTGTTCTCTAGGGATGCATGGCGCTGTGTEST: gi|33795503|gb|CF323621.1|CF323621
genomic: GAGGAGAGGCCAGGCTGGTGCACTGATCCCCATCTGCCACCATGTGCAGCgtaaggggct ... tgatgtgcagATTTGTTGAAATCATGGCAACCGTGTTCTCTAGGGATGCATGGCGCTGTGT
EST: GAGGAGAGGCCAGGCTGGTGCACTGATCCCCATCTGCCACCATGTGCAGC ATTTGTTGAAATCATGGCAACCGTGTTCTCTAGGGATGCATGGCGCTGTGTEST: gi|27577797|gb|CB000492.1|CB000492
genomic: GAGGAGAGGCCAGGCTGGTGCACTGATCCCCATCTGCCACCATGTGCAGCgtaaggggct ... tgatgtgcagATTTGTTGAAATCATGGCAACCGTGTTCTCTAGGGATGCATGGCGCTGTGT
EST: ATCTGCCACCATGTGCAGC ATTTGTTGAAATCATGGCCTTCGTGTTCTCTAGGGATGCATGGCGCTGTGT
genomic: ATCTGCCACCATGTGCAGCgtaaggggct ... tgatgtgcagATTTGTTGAAATCATGGCAACCGTGTTCTCTAGGGATGCATGGCGCTGTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTTACTGAGGAGAGGCCAGGCTGGTGCACTGATCCCCATCTGCCACCATGTGCAGCgtaaggggctaagggcccagaattttattgtgtatttaaatttctttgcccaaatatctgtattacattcaatttgatgtgcag
- - - GAGGAG
- - - - AGGAGA
- - - - - GAGAGG