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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAGGTCCACCAGTCAACTTCCTGACTCCTGCAAATCCAATTGAAAAACTAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAGgtttgttctctctaaagaattacctaggaatcttcaatttctatatcttgtttcagtttgtcttatttttttggtcatggtgtgcggactgtattcccaa...

Basic information

species Oryza sativa
transcript LOC_Os02g15550.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g15550.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G120578_T01 (Zea mays), 5'ss of exon 10
AGAAGGTCCACCAGTCAACTTCCTGACTCCTGCAAATCCAATTGAAAAACTAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAGgtttgttctctctaaagaattacctaggaatctt-----caatttctatatcttgtttcagtttgtcttatttttttggtcatggtgtgcggactgtattcccaa
 || || ||||| |||||||| |||||||||| ||||||||||||| || | ||||||||||   |||| |||||||| || || |||||||||||||||||  ||| |||  ||   ||  | || || |  |     |||| | | | | ||| |||||  |||  |    |||  ||| | |  ||| ||   |  ||    
GGATGGCCCACCGGTCAACTTTCTGACTCCTGTAAATCCAATTGAAGAAGTGGAAGGAGCTACTAAAGCGGGAAGGGAGATCAGGTTTTATAATTCAGAGgtcagttttcttcaatcgatcgcatatgatttcttgtgccaatattttttttttgattcagcctgtgctgcccttt--gtcctagcatgcagaagtttatct---

upper sequence: LOC_Os02g15550.1 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G060896_T02 (Zea mays), 5'ss of exon 10
AGAAGGTCCACCAGTCAACTTCCTGACTCCTGCAAATCCAATTGAAAAACTAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAGgtttgttctctctaaagaattacctaggaatcttcaatttctatatcttgtttcagtttgtcttatttttttggtcatggtgtgcggactgtattcccaa
||||||||||   || ||||| |||||||||  ||||||||||||||| || ||||||||||   |||| |||||||| || ||||||||||| ||||||||  ||||||| |||  ||| |     | ||  |  |||    |    |||| ||    |    |   | |          |||   |||  |       
AGAAGGTCCATTGGTGAACTTTCTGACTCCTATAAATCCAATTGAAAAGCTGGAAGGAGCTACAAAAGCTGGAAGGGAGATCAGATTTTATAACTCAGAGgtccgttctctttaaccaatcatactaggattatggattatgcttgtgtgttgcaacaagaacaaccatctccaaaggctcgtgactacttgaccttggc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88530764|gb|CI459182.1|CI459182
EST:     AGGGATATTAGATTTTATAATTCAGAG                         ATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
genomic: AGGGATATTAGATTTTATAATTCAGAGgtttgttctc ... tgctgatcagATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
EST: gi|13895929|gb|AU182265.1|AU182265
EST:     TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAG                         ATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
genomic: TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAGgtttgttctc ... tgctgatcagATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
EST: gi|29664251|gb|CB660526.1|CB660526
EST:     TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAG                         ATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
genomic: TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAGgtttgttctc ... tgctgatcagATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
EST: gi|86541998|gb|CI182204.1|CI182204
EST:     TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAG                         ATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
genomic: TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAGgtttgttctc ... tgctgatcagATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
EST: gi|89195347|gb|CI051460.1|CI051460
EST:     TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAG                         ATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
genomic: TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAGgtttgttctc ... tgctgatcagATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
EST: gi|86904643|gb|CI321551.1|CI321551
EST:     TTTTATAATTCAGAG                         ATGCATAGACCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
genomic: TTTTATAATTCAGAGgtttgttctc ... tgctgatcagATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
EST: gi|88261739|gb|CI365315.1|CI365315
EST:     TAGAAGGAGCTAT-GAAGCA-GAAGGGATATTAGATTTTATAATTCAGAG                         ATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
genomic: TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAGgtttgttctc ... tgctgatcagATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
EST: gi|88536186|gb|CI465916.1|CI465916
EST:     AGGAAGGGATATTAGATTTTATAATTCAGAG                         ATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
genomic: AGGAAGGGATATTAGATTTTATAATTCAGAGgtttgttctc ... tgctgatcagATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
EST: gi|27546253|gb|CA764321.2|CA764321
EST:     TAGAGGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAG                         ATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
genomic: TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAGgtttgttctc ... tgctgatcagATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
EST: gi|88961587|gb|CI096851.1|CI096851
EST:     TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAG                         ATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
genomic: TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAGgtttgttctc ... tgctgatcagATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
EST: gi|86497824|gb|CI140457.1|CI140457
EST:     TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAG                         ATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
genomic: TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAGgtttgttctc ... tgctgatcagATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
EST: gi|88543468|gb|CI473478.1|CI473478
EST:     GGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAG                         ATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGGTAGAG
genomic: GGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAGgtttgttctc ... tgctgatcagATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
EST: gi|38479602|gb|CF963699.1|CF963699
EST:     TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAG                         ATGCATAGAGGCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
genomic: TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAGgtttgttctc ... tgctgatcagATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
EST: gi|87027956|gb|CI276312.1|CI276312
EST:     TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAG                         ATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
genomic: TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAGgtttgttctc ... tgctgatcagATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
EST: gi|86428932|gb|CI075613.1|CI075613
EST:     TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAG                         ATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
genomic: TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAGgtttgttctc ... tgctgatcagATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
EST: gi|88522281|gb|CI450027.1|CI450027
EST:     CAGGAAGGGATATTAGATTTTATAATTCAGAG                         ATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
genomic: CAGGAAGGGATATTAGATTTTATAATTCAGAGgtttgttctc ... tgctgatcagATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
EST: gi|87010799|gb|CI312491.1|CI312491
EST:     TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAG                         ATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
genomic: TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAGgtttgttctc ... tgctgatcagATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
EST: gi|88964961|gb|CI097829.1|CI097829
EST:     GGAAGGGATATTAGATTTTATAATTCAGAG                         ATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
genomic: GGAAGGGATATTAGATTTTATAATTCAGAGgtttgttctc ... tgctgatcagATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
EST: gi|29667241|gb|CB663516.1|CB663516
EST:     TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAG                         ATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
genomic: TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAGgtttgttctc ... tgctgatcagATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
EST: gi|88531179|gb|CI459637.1|CI459637
EST:     TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAG                         ATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
genomic: TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAGgtttgttctc ... tgctgatcagATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
EST: gi|86882705|gb|CI327356.1|CI327356
EST:     GATATTAGATTTTATAATTCAGAG                         ATGCATAGACCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
genomic: GATATTAGATTTTATAATTCAGAGgtttgttctc ... tgctgatcagATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
EST: gi|88535675|gb|CI462490.1|CI462490
EST:     GATATTAGATTTTATAATTCAGAG                         ATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
genomic: GATATTAGATTTTATAATTCAGAGgtttgttctc ... tgctgatcagATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
EST: gi|86484793|gb|CI127426.1|CI127426
EST:     TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAG                         ATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
genomic: TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAGgtttgttctc ... tgctgatcagATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
EST: gi|86859105|gb|CI277026.1|CI277026
EST:     TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAG                         ATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
genomic: TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAGgtttgttctc ... tgctgatcagATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
EST: gi|87033906|gb|CI188530.1|CI188530
EST:     GAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAG                         ATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
genomic: GAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAGgtttgttctc ... tgctgatcagATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
EST: gi|88256390|gb|CI358778.1|CI358778
EST:     GATTTTATAATTCAGAG                         ATGCATAGAGCCCGCATTTGTTCTCCCAACCTTTGGCAAGGAGAGAGGTAG
genomic: GATTTTATAATTCAGAGgtttgttctc ... tgctgatcagATGCATAGAG-CCGCATTTGTTCTCCCAACCTTT-GCAAGGAGAGAGCTAG
EST: gi|86835431|gb|CI347888.1|CI347888
EST:     TAGAAGGAGCTATGGAAGCAGGAA-GGATATTAGATTTTATAATTCAGAG                         ATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
genomic: TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAGgtttgttctc ... tgctgatcagATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
EST: gi|38471600|gb|CF955731.1|CF955731
EST:     TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAG                         ATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
genomic: TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAGgtttgttctc ... tgctgatcagATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
EST: gi|87028025|gb|CI257185.1|CI257185
EST:     TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAG                         ATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
genomic: TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAGgtttgttctc ... tgctgatcagATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
EST: gi|88531267|gb|CI459732.1|CI459732
EST:     ATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAG                         ATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
genomic: ATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAGgtttgttctc ... tgctgatcagATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
EST: gi|88521827|gb|CI448992.1|CI448992
EST:     TATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAG                         ATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
genomic: TATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAGgtttgttctc ... tgctgatcagATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
EST: gi|88528516|gb|CI456759.1|CI456759
EST:     TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAG                         ATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
genomic: TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAGgtttgttctc ... tgctgatcagATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
EST: gi|29657801|gb|CB654076.1|CB654076
EST:     TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAG                         ATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
genomic: TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAGgtttgttctc ... tgctgatcagATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
EST: gi|88993298|gb|CI257726.1|CI257726
EST:     TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAG                         ATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCCAAGGAGAGAGCTAGA
genomic: TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAGgtttgttctc ... tgctgatcagATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGC-AAGGAGAGAGCTAGA
EST: gi|86477600|gb|CI120233.1|CI120233
EST:     TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAG                         ATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
genomic: TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAGgtttgttctc ... tgctgatcagATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
EST: gi|88850542|gb|CI093223.1|CI093223
EST:     TAGAAGGAGCTATGGAAGCATGAAGGGATATTAGATTTTATAATTCAGAG                         ATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
genomic: TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAGgtttgttctc ... tgctgatcagATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
EST: gi|29642052|gb|CB647059.1|CB647059
EST:     TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAG                         ATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
genomic: TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAGgtttgttctc ... tgctgatcagATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
EST: gi|29619281|gb|CB624293.1|CB624293
EST:     TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAG                         ATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
genomic: TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAGgtttgttctc ... tgctgatcagATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
EST: gi|89188070|gb|CI115319.1|CI115319
EST:     GGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAG                         ATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
genomic: GGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAGgtttgttctc ... tgctgatcagATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
EST: gi|86542055|gb|CI182261.1|CI182261
EST:     TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAG                         ATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
genomic: TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAGgtttgttctc ... tgctgatcagATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
EST: gi|29672899|gb|CB669174.1|CB669174
EST:     TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAG                         ATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG
genomic: TAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAGgtttgttctc ... tgctgatcagATGCATAGAGCCGCATTTGTTCTCCCAACCTTTGCAAGGAGAGAGCTAGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGAAGGTCCACCAGTCAACTTCCTGACTCCTGCAAATCCAATTGAAAAACTAGAAGGAGCTATGGAAGCAGGAAGGGATATTAGATTTTATAATTCAGAGgtttgttctctctaaagaattacctaggaatcttcaatttctatatcttgtttcagtttgtcttatttttttggtcatggtgtgcggactgtattcccaa

- - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG