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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTTATGGGTTTGGTATTCTCTTGTTGGAACTGATCACTGGGCCTAAAACCTTGAGCAATGGGCACGCGCAATCTCAGAAGGGAATGATTCTAGATTGGgtatctccttttagttcaatctttatctaattacctaactactgtcatttgatgcccatatccttgtatactttcttaccacctaatcttaattctctgcag

Basic information

species Oryza sativa
transcript LOC_Os02g14120.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g14120.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G146794_T01 (Zea mays), 5'ss of exon 2
TGTTTATGGGTTTGGTATTCTCTTGTTGGAACTGATCACTGGGCCTAAAACCTTGAGCAATGGGCACGCGCAATCTCAGAAGGGAATGATTCTAGATTGGgtatctccttttagttcaatctttatctaattacctaactactgtcatttgatgcccatatccttgtatactttcttaccacctaatcttaattctctgcag
||||||||||||||| |||||| ||||||||||||| ||||| |||||||||||||||||||| || |  || |||||||| || ||||||||||| ||||||      ||  || ||    |||| ||  ||| |   |||||| |||| |  ||||      || | |  ||  || |||||  | |   | || | |||
TGTTTATGGGTTTGGCATTCTCCTGTTGGAACTGATTACTGGTCCTAAAACCTTGAGCAATGGACATGGCCAGTCTCAGAAAGGCATGATTCTAGACTGGgtaa---gcttctgtgca---cttatttacgtac-tgtttactgt-atttcagccccacg---ctggagagatt--taacacctgctttcgttcctattcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218484511|gb|FG944256.1|FG944256
EST:     CCTTGAGCAATGGGCACGCGCAATCTCAGAAGGGAATGATTCTAGATTGG                         GTTAGAGAAGTCAAGGAAGAAAATAAACTGGA
genomic: CCTTGAGCAATGGGCACGCGCAATCTCAGAAGGGAATGATTCTAGATTGGgtatctcctt ... ttctctgcagGTTAGAGAAGTCAAGGAAGAAAATAAACTGGA
EST: gi|87029827|gb|CI274508.1|CI274508
EST:     CCTTGAGCAATGGGCACGCGCAATCTCAGAAGGGAATGATTCTAGATTGG                         GTTAGAGAAGTCAAGGAAGAAAATAAACTGGATAAACTGGTTGACAGGGAT
genomic: CCTTGAGCAATGGGCACGCGCAATCTCAGAAGGGAATGATTCTAGATTGGgtatctcctt ... ttctctgcagGTTAGAGAAGTCAAGGAAGAAAATAAACTGGATAAACTGGTTGACAGGGAT