Sequence
atgc intronic sequence ATGC exonic sequenceCCGGAGTGGATGGCACCAGAGGTTCTACGTAATGAGCCATCAAATGAGAAgtgagttgcttagttttctcatgacatgttggcctttccatttacttcctgtcatgttctcctgctgattgaaaattgaatgctggcatcag
Basic information
species | Oryza sativa |
transcript | LOC_Os02g12810.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os02g12810.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G413069_T01 (Zea mays), 5'ss of exon 11
CCGGAGTGGATGGCACCAGAGGTTCTACGTAATGAGCCATCAAATGAGAAgtgagttgcttagttttctcatgacatgttggcctttccatttacttcctgtcatgttctcctgctgattgaaaattgaatgctggcatcag
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CCAGAGTGGATGGCACCTGAGGTACTACGAAATGAACCATCTAATGAGAAgtgagttgttgagttgcac--ggacatgttg--cttttttttta-ttgctgt--tgtttcggcgaaagctgaatgttttgtgc---cattag
upper sequence: LOC_Os02g12810.1 (Oryza sativa), 5'ss of exon 10
lower sequence: Vv04s0008g01310.t01 (Vitis vinifera), 5'ss of exon 12
CCGGAGTGGATGGCACCAGAGGTTCTACGTAATGAGCCATCAAATGAGAAgtgagttgc-ttagt-----tttctcatgacatgttggcctttc-catttacttcctgtcatgttctcctgctgattgaaaattgaat--gctggcat-cag
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CCTGAGTGGATGGCACCAGAAGTTCTAAGGAATGAGCCATCGAATGAAAAgtgagtgaaattagtatatattatgcttgaaaccttggtagatggtgaatctatcttggaattttctgtcataaatttccaatcaatctggtttgcttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|112785946|gb|EE591740.1|EE591740EST: CCGGAGTGGATGGCACCAGAGGTTCTACGTAATGAGCCATCAAATGAGAA GTGTGACGTCTACAGTTTCGGAGTAATCCTATGGGAACTAGCAACAATGCG
genomic: CCGGAGTGGATGGCACCAGAGGTTCTACGTAATGAGCCATCAAATGAGAAgtgagttgct ... ctggcatcagGTGTGACGTATACAGTTTTGGAGTAATCCTATGGGAACTAGCAACAATGCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCGGAGTGGATGGCACCAGAGGTTCTACGTAATGAGCCATCAAATGAGAAgtgagttgcttagttttctcatgacatgttggcctttccatttacttcctgtcatgttctcctgctgattgaaaattgaatgctggcatcag
- - AGTGGA