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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTTGGTATTCTGCATTCGCAATGCTCAGAAAAGAAAGGATGATACCAGCAGCAATTCAAAAGATTTTGTAGGTCCACTATCAGTAAACATAGAGAGAGgtattacacttgttcatatgctgtcatgatttcttattgcaatatttttcttatctttaataatatataatttcagttagctgagacaatccttagttga...

Basic information

species Oryza sativa
transcript LOC_Os02g09740.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g09740.2 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G103070_T01 (Zea mays), 5'ss of exon 10
CTTTTGGTATTCTGCATTCGCAATGCTCAGAAAAGAAAGGATGATACCAGCAGCAATTCAAAAGATTTTGTAGGTCCACTATCAGTAAACATAGAGAGAGgtattacacttgttcatatgctgtcatgatttcttattgcaatatttttctt-----atctttaat-aatatataat-ttcagttagctgagacaatccttagttga
||| || ||| ||||||  ||||||||||||||||||  |||||| |||||||  | ||||||||||||| ||| || ||| |||||||||| ||||||||||| |||||| ||   ||| ||| ||  | || | ||||||||    ||||     ||  |  || |||||| | | ||||||||||| |||      ||  |   
CTTCTGTTATGCTGCATGTGCAATGCTCAGAAAAGAACTGATGATGCCAGCAGTGAATCAAAAGATTTTGGAGGACCTCTAACAGTAAACATTGAGAGAGgtatgacacttttt---atggtgt-atattgtcatgttgcaatacacctcttgattgatgctagatcaatatagattattcagttagctaagatgccatttttt---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58668716|gb|CK057402.1|CK057402
EST:     CAGCAATTCAAAAGATTTTGTAGGTCCACTATCAGTAAACATAGAGAGAG                         CTTCTAACAGGGAAATCCCAGAGCAGAGTCCTGAGAATACTTCTGTAGCAA
genomic: CAGCAATTCAAAAGATTTTGTAGGTCCACTATCAGTAAACATAGAGAGAGgtattacact ... tcttctgtagCTTCTAACAGGGAAATCCCAGAGCAGAGTCCTGAGAATACTTCTGTAGCAA
EST: gi|58681620|gb|CK070307.1|CK070307
EST:     CAGCAATTCAAAAGATTTTGTAGGTCCACTATCAGTAAACATAGAGAGAG                         CTTCTAACAGGGAAATCCCAGAGCAGAGTCCTGAGAATACTTCTGTAGCAA
genomic: CAGCAATTCAAAAGATTTTGTAGGTCCACTATCAGTAAACATAGAGAGAGgtattacact ... tcttctgtagCTTCTAACAGGGAAATCCCAGAGCAGAGTCCTGAGAATACTTCTGTAGCAA