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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTCTTTGGAGCTTGGTGGCAATGCACCTTGCATTGTTTTTGATGATGCAGACATTGATGTTGCCATTAAAGGCAGTgtaagcaaaaaaaaaaaagacttatctaccatttcaacatttttttttgtggtgtactttgtttctcattgatatactgaccaacatacatcatcattaattgcattttatattctattatgatgcatgtttatcaacactacttctgttcag

Basic information

species Oryza sativa
transcript LOC_Os02g07760.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g07760.1 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G119482_T01 (Zea mays), 5'ss of exon 11
GTTTCTTTGGAGCTTGGTGGCAATGCACCTTGCATTGTTTTTGATGATGCAGACATTGATGTTGCCATTAAAGGCAGTgtaagcaaaaaaaaaaaagacttatctaccatttcaacatttttttttgtggtgtactttgtttctcattgatatactgaccaacatacatcatcattaattgcattttatattctattatgatgcatgtttatcaacactacttctgttcag
|| || ||||| |||||||| |||||||||||||||||||| |||||||| ||||||||||||||  ||||||||||||||||              |||       || ||| |||||| |            ||||||||||        |||| | |||   |  |||||  || || |  ||| |     |   |||  |||   | |||| | |            
GTCTCCTTGGAACTTGGTGGGAATGCACCTTGCATTGTTTTCGATGATGCGGACATTGATGTTGCTGTTAAAGGCAGTgtaag--------------act-------cacttctacatttat------------ctttgtttctt-------tactaaacaaatcaagtcatctctagtt-ccctttgtggatgagggtga--catagctgtcaagaatgt----------

upper sequence: LOC_Os02g07760.1 (Oryza sativa), 5'ss of exon 11
lower sequence: GRMZM2G128114_T01 (Zea mays), 5'ss of exon 11
GTTTCTTTGGAGCTTGGTGGCAATGCACCTTGCATTGTTTTTGATGATGCAGACATTGATGTTGCCATTAAAGGCAGTgtaagcaaaaaaaaaaaagacttatctaccatttcaacatttttttttgtggtgtactttgtttctcattgatatactgaccaacatacatcatcattaattgcattttatattctattatgatgcatgtttatcaacactacttctgttcag
|| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||              |||       || ||  |||||| | ||         ||||||||||           | || | ||||||     || || | ||| | |  |||  |  || || |||    |  ||| ||  |        
GTCTCTTTGGAACTTGGTGGGAATGCACCTTGCATTGTTTTTGATGATGCAGACATTGATGTTGCTGTTAAAGGCAGTgtaag--------------act-------cacttttacatttatctt---------ctttgtttct-----------ttactagcatacaattatataaaat-catctcaagttccct--tggtgaatgagggt-gacattatct--------

upper sequence: LOC_Os02g07760.1 (Oryza sativa), 5'ss of exon 11
lower sequence: GLYMA08G17450.1 (Glycine max), 5'ss of exon 11
GTTTCTTTGGAGCTTGGTGGCAATGCACCTTGCATTGTTTTTGATGATGCAGACATTGATGTTGCCATTAAAGGCAGTgtaagcaaaaaaaaaaaagacttatctaccatttcaacatttttttttgtggtgtactttgtttctcattgatatactgaccaacatacatcatcattaattgcattttatattctattatgatgcatgtttatcaacactacttctgttcag
|| ||| | || || |||||||||||||||||||| |||||||||||||| ||| | ||||||||  | ||||| | ||||||  | |||  |  ||| |          || ||   | ||||| ||     |  ||| ||   || ||| | |||       |   | ||  ||  |||||  |||                                           
GTATCTCTTGAACTCGGTGGCAATGCACCTTGCATAGTTTTTGATGATGCTGACCTGGATGTTGCAGTAAAAGGAACTgtaagttagaaaggacgagaatgcatggtggctttaatgatgttttt-gtttaagatattgctttatatggatttgctg-------tgtctgat--ttgtttgcaactta-------------------------------------------

upper sequence: LOC_Os02g07760.1 (Oryza sativa), 5'ss of exon 11
lower sequence: GLYMA15G41690.1 (Glycine max), 5'ss of exon 11
GTTTCTTTGGAGCTTGGTGGCAATGCACCTTGCATTGTTTTTGATGATGCAGACATTGATGTTGCCATTAAAGGCAGTgtaagcaaaaaaaaaaaagacttatctaccatttcaacatttttttttgtggtgtactttgtttctcattgatatactgaccaacatacatcatcattaattgcattttatattctattatgatgcatgtttatcaacactacttctgttcag
|| ||| | || || || ||||||||||||||||| |||||||||||||| ||| | ||||||||  | ||||| | ||||||  | |||  |  ||| |          |  ||   | ||||| ||     |  ||| ||   || ||| | |||       |   | ||  ||  || ||  |||                                           
GTATCTCTTGAACTCGGCGGCAATGCACCTTGCATAGTTTTTGATGATGCTGACCTGGATGTTGCAGTAAAAGGAACTgtaagttagaaaggacgagaatgcatggtggctgtaatgatgttttt-gttaaagatattgctttatatggatttcctg-------tgtctgat--ttgtttacaactta-------------------------------------------

upper sequence: LOC_Os02g07760.1 (Oryza sativa), 5'ss of exon 11
lower sequence: PP1S6_180V6.1 (Physcomitrella patens), 5'ss of exon 10
GTTTCTTTGGAGCTTGGTGGCAATGCACCTTGCATTGTTTTTGATGATGCAGACATTGATGTTGCCATTAAAGGCAGTgtaagcaaaaaaaaaaaagacttatctaccatttcaacattttttt----ttgtggtgtactttgtttctcattgatatactgaccaacatacatcatcattaattgcattttata-ttctattatgatgc--atgtttatcaaca-ctacttctgttcag
||||| || ||||||||||| || ||||| ||||| ||||||||||||||  |  | || |||||  ||||||| ||||   | |   | |   ||    | | |   |||| |   | |||||    || |  | || | |  || | |||  || | |     |  |   |    | | |||  |||| | |  |  |    ||||   |   | ||   || ||   |   | |||
GTTTCCTTAGAGCTTGGTGGTAACGCACCGTGCATCGTTTTTGATGATGCTAATTTGGACGTTGCTGTTAAAGG-AGTG-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163925517|gb|EG715386.1|EG715386
EST:     CTTGCATTGTTTTTGATGATGCAGACATTGATGTTGCCATTAAAGGCAGT                         CTTGCTGCTAAGTTCCGTAACAGCGGACAGACATGTGTATGTGCAAACAGG
genomic: CTTGCATTGTTTTTGATGATGCAGACATTGATGTTGCCATTAAAGGCAGTgtaagcaaaa ... ttctgttcagCTTGCTGCTAAGTTCCGTAACAGCGGACAGACATGTGTATGTGCAAACAGG
EST: gi|218498176|gb|FG949780.1|FG949780
EST:     CTTGCATTGTTTTTGATGATGCAGACATTGATGTTGCCATTAAAGGCAGT                         CTTGCTGCTAAGTTCCGTAACAGCGGACAGACATGTGTATGTGCAAACAGG
genomic: CTTGCATTGTTTTTGATGATGCAGACATTGATGTTGCCATTAAAGGCAGTgtaagcaaaa ... ttctgttcagCTTGCTGCTAAGTTCCGTAACAGCGGACAGACATGTGTATGTGCAAACAGG
EST: gi|218482143|gb|FG968613.1|FG968613
EST:     CTTGCATTGTTTTTGATGATGCAGACATTGATGTTGCCATTAAAGGCAGT                         CTTGCTGCTAAGTTCCGTAACAGCGGACAGACATGTGTATGTGCAAACAGG
genomic: CTTGCATTGTTTTTGATGATGCAGACATTGATGTTGCCATTAAAGGCAGTgtaagcaaaa ... ttctgttcagCTTGCTGCTAAGTTCCGTAACAGCGGACAGACATGTGTATGTGCAAACAGG
EST: gi|218492318|gb|FG946726.1|FG946726
EST:     CTTGCATTGTTTTTGATGATGCAGACATTGATGTTGCCATTAAAGGCAGT                         CTTGCTGCTAAGTTCCGTAACAGCGGACAGACATGTGTATGTGCAAACAGG
genomic: CTTGCATTGTTTTTGATGATGCAGACATTGATGTTGCCATTAAAGGCAGTgtaagcaaaa ... ttctgttcagCTTGCTGCTAAGTTCCGTAACAGCGGACAGACATGTGTATGTGCAAACAGG
EST: gi|218490731|gb|FG966180.1|FG966180
EST:     CTTGCATTGTTTTTGATGATGCAGACATTGATGTTGCCATTAAAGGCAGT                         CTTGCTGCTAAGTTCCGTAACAGCGGACAGACATGTGTATGTGCAAACAGG
genomic: CTTGCATTGTTTTTGATGATGCAGACATTGATGTTGCCATTAAAGGCAGTgtaagcaaaa ... ttctgttcagCTTGCTGCTAAGTTCCGTAACAGCGGACAGACATGTGTATGTGCAAACAGG
EST: gi|66918914|gb|CX105762.1|CX105762
EST:     CTTGCATTGTTTTTGATGATGCAGACATTGATGTTGCCATTAAAGGCAGT                         CTTGCTGCTAAGTTCCGTAACAGCGGACAGACATGTGTATGTGCAAACAGG
genomic: CTTGCATTGTTTTTGATGATGCAGACATTGATGTTGCCATTAAAGGCAGTgtaagcaaaa ... ttctgttcagCTTGCTGCTAAGTTCCGTAACAGCGGACAGACATGTGTATGTGCAAACAGG
EST: gi|58694576|gb|CK083263.1|CK083263
EST:     CTTGCATTGTTTTTGATGATGCAGACATTGATGTTGCCATTAAAGGCAGT                         CTTGCTGCTAAGTTCCGTAACAGCGGACAGACATGTGTATGTGCAAACAGG
genomic: CTTGCATTGTTTTTGATGATGCAGACATTGATGTTGCCATTAAAGGCAGTgtaagcaaaa ... ttctgttcagCTTGCTGCTAAGTTCCGTAACAGCGGACAGACATGTGTATGTGCAAACAGG