Sequence
atgc intronic sequence ATGC exonic sequenceTGAGAATAGTTCTTCCATCAGGAAAGCATGTGATTTTATAATGTCAAAGCAGCTCAATACTGGTGGATGGGGAGAAAGTCATGTCTCTAATGAAACTAAGgtaagttttttctctctctttctcaacatcattcattttttttatggttgaataagcctgtgtagttcatttggttggaagttttatgataattggcatg...
Basic information
species | Oryza sativa |
transcript | LOC_Os02g04750.3 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os02g04750.2 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G468929_T01 (Zea mays), 5'ss of exon 14
TGAGAATAGTTCTTCCATCAGGAAAGCATGTGATTTTATAATGTCAAAGCAGCTCAATACTGGTGGATGGGGAGAAAGTCATGTCTCTAATGAAACTAAGgtaagttttttctctctctttctcaacatcattcattttttttatggttgaataagcctgtgtagttcatttggttggaagttttatgataattggc-atg--
|| ||||| || |||||||||||||| | ||| || |||| |||||||||||| ||||||||||||||||||| ||| | |||||||||||| |||| | | || | ||| | | | || | || | ||| | || || || || | | || | | ||| | | || |||
TGGAAATAGCATGTCTATCAGGAAAGCATGCCAGTTTCTATTGTCGAAGCAGCTCAATTCTGGTGGATGGGGAGAAAGCCATTTATCTAATGAAACTCAGgtta-tcaattttttcttgtaattgttaggatgc-ttctatttgttatt-aacaatttggttaaataaataggacaaacaatttgtttgttgttaattatgct
upper sequence: LOC_Os02g04750.2 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G006937_T01 (Zea mays), 5'ss of exon 15
TGAGAATAGTTCTTCCATCAGGAAAGCATGTGATTTTATAATGTCAAAGCAGCTCAATACTGGTGGATGGGGAGAAAGTCATGTCTCTAATGAAACTAAGgtaagttttttctctctctttctcaacatcattcattttttttatggttg-----aataagcctgtgtagttcatttggttggaagttttatgataattggcatg-----------------------------------------------------------------------------------------------
|||| || ||| ||| |||||||||| | || ||| |||| |||||||||| ||||||||||||||||||||||||| || ||| ||||||| |||||| | || | | || || | || | || || || | | ||||| | || || ||| || | |
CAAGAACAGCCCTTGCATACGGAAAGCATGCCACTTCATATTGTCGAAGCAGCTCAGTACTGGTGGATGGGGAGAAAGTCATATCGCTATTGAAACTCAGgtaaccatattttgtttca--cttcatattttgaatccttgttgaagatactagcaataaattgacacatgatatgaatctgtgcgttctaactacgctcatttaatttgttctcaatatgcctttagtctcaagtccctagcgagtcataggtagaatatctttgaacttaccttttcccaccatgcaatcctaaatagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|58687911|gb|CK076598.1|CK076598EST: AGCTCAATACTGGTGGATGGGGAGAAAGTCATGTCTCTAATGAAACTAAG GTTTATGTAAACATCAAAGGTGATCATGCTCATGCAGTGAATACTGCTTGG
genomic: AGCTCAATACTGGTGGATGGGGAGAAAGTCATGTCTCTAATGAAACTAAGgtaagttttt ... tatcaaacagGTTTATGTAAACATCAAAGGTGATCATGCTCATGCAGTGAATACTGCTTGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGAGAATAGTTCTTCCATCAGGAAAGCATGTGATTTTATAATGTCAAAGCAGCTCAATACTGGTGGATGGGGAGAAAGTCATGTCTCTAATGAAACTAAGgtaagttttttctctctctttctcaacatcattcattttttttatggttgaataagcctgtgtagttcatttggttggaagttttatgataattggcatg
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA