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TGAGAATAGTTCTTCCATCAGGAAAGCATGTGATTTTATAATGTCAAAGCAGCTCAATACTGGTGGATGGGGAGAAAGTCATGTCTCTAATGAAACTAAGgtaagttttttctctctctttctcaacatcattcattttttttatggttgaataagcctgtgtagttcatttggttggaagttttatgataattggcatg...
species | Oryza sativa |
transcript | LOC_Os02g04750.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AGCTCAATACTGGTGGATGGGGAGAAAGTCATGTCTCTAATGAAACTAAG GTTTATGTAAACATCAAAGGTGATCATGCTCATGCAGTGAATACTGCTTGGEST: gi|58692992|gb|CK081679.1|CK081679
genomic: AGCTCAATACTGGTGGATGGGGAGAAAGTCATGTCTCTAATGAAACTAAGgtaagttttt ... tatcaaacagGTTTATGTAAACATCAAAGGTGATCATGCTCATGCAGTGAATACTGCTTGG
EST: AGCTCAATACTGGTGGATGGGGAGAAAGTCATGTCTCTAATGAAACTAAG GTTTATGTAAACATCAAAGGTGATCATGCTCATGCAGTGAATACTGCTTGGEST: gi|38483023|gb|CF966825.1|CF966825
genomic: AGCTCAATACTGGTGGATGGGGAGAAAGTCATGTCTCTAATGAAACTAAGgtaagttttt ... tatcaaacagGTTTATGTAAACATCAAAGGTGATCATGCTCATGCAGTGAATACTGCTTGG
EST: AGCTCAATACTGGTGGATGGGGAGAAAGTCATGTCTCTAATGAAACTAAG GTTTATGTAAACATCAAAGGTGATCATGCTCATGCAGTGAATACTGCTTGGEST: gi|117230816|gb|CT854085.1|CT854085
genomic: AGCTCAATACTGGTGGATGGGGAGAAAGTCATGTCTCTAATGAAACTAAGgtaagttttt ... tatcaaacagGTTTATGTAAACATCAAAGGTGATCATGCTCATGCAGTGAATACTGCTTGG
EST: AGCTCAATACTGGTGGATGGGGAGAAAGTCATGTCTCTAATGAAACTAAG GTTTATGTAAACATCAAAGGTGATCATGCTCATGCAGTGAATACTGCTTGGEST: gi|58690416|gb|CK079103.1|CK079103
genomic: AGCTCAATACTGGTGGATGGGGAGAAAGTCATGTCTCTAATGAAACTAAGgtaagttttt ... tatcaaacagGTTTATGTAAACATCAAAGGTGATCATGCTCATGCAGTGAATACTGCTTGG
EST: AGCTCAATACTGGTGGATGGGGAGAAAGTCATGTCTCTAATGAAACTAAG GTTTATGTAAACATCAAAGGTGATCATGCTCATGCAGTGAATACTGCTTGG
genomic: AGCTCAATACTGGTGGATGGGGAGAAAGTCATGTCTCTAATGAAACTAAGgtaagttttt ... tatcaaacagGTTTATGTAAACATCAAAGGTGATCATGCTCATGCAGTGAATACTGCTTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGAATAGTTCTTCCATCAGGAAAGCATGTGATTTTATAATGTCAAAGCAGCTCAATACTGGTGGATGGGGAGAAAGTCATGTCTCTAATGAAACTAAGgtaagttttttctctctctttctcaacatcattcattttttttatggttgaataagcctgtgtagttcatttggttggaagttttatgataattggcatg
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA