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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAGGAATTAAGAACCGCTACTTCAATAGTGCATTTTTGGGTTATACGGTGGGTTTGACCGTGACGATAATTGTGATGAACTGGTTTCAAGCCGCACAGgtgagtcatgttacttgggattcttgccatcatgtttcctccactcattttcaaggcacatcataagagtgagtttagttcgtagattatttaaacaaaa...

Basic information

species Oryza sativa
transcript LOC_Os02g02530.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g02530.2 (Oryza sativa), 5'ss of exon 10
lower sequence: Vv06s0009g03520.t01 (Vitis vinifera), 5'ss of exon 10
AAGAGGAATTAAGAACCGCTACTTCAATAGTGCATTTTTGGGTTATACGGTGGGTTTGACCGTGACGATAATTGTGATGAACTGGTTTCAAGCCGCACAGgtgagtcatgttacttgggattcttgccatcatgtttcctccactcatt----ttcaaggcacatcataagagtgagtttagttcgtagattatttaaacaaaa--------------------------------------------------------------------------------------------
 ||||| |    |||||  ||||| || |||||||||||||| |||||    ||||||   || || ||  |||| ||||||||||||||||| |||||||||| |  |   |  |    ||||       || |  |    ||   |     |  |   | | |  |   | |   || |||   ||| |   || |||                                                                                                
CAGAGGGAAAGGGAACCAGTACTTTAAGAGTGCATTTTTGGGATATACAACCGGTTTGGTTGTAACAATTGTTGTCATGAACTGGTTTCAAGCTGCACAGgtgactactacaaaatccatttctctatcctatatgactgatacgtgtggagatatagttccctttgttgaatttcattcagtatctagctggctttaactgtttaagaccagtggaagttagagtatttccatgtgtgagttttctcgtgttattcactacttggtcctaactgttattctaacttcactttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86436738|gb|CI118460.1|CI118460
EST:     TGGGTTTGACCGTGACGATAATTGTGATGAACTGGTTTCAAGCCGCACAG                         CCTGCCCTCTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
genomic: TGGGTTTGACCGTGACGATAATTGTGATGAACTGGTTTCAAGCCGCACAGgtgagtcatg ... gtttttgcagCCTGCCCTCTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
EST: gi|88246627|gb|CI246476.1|CI246476
EST:     ACCGTGACGATAATTGTGATGAACTGGTTTCAAGCCGCACAG                         CCTGCCCTCTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
genomic: ACCGTGACGATAATTGTGATGAACTGGTTTCAAGCCGCACAGgtgagtcatg ... gtttttgcagCCTGCCCTCTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
EST: gi|86536960|gb|CI177166.1|CI177166
EST:     TGGGTTTGACCGTGACGATAATTGTGATGAACTGGTTTCAAGCCGCACAG                         CCTGCCCTCTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
genomic: TGGGTTTGACCGTGACGATAATTGTGATGAACTGGTTTCAAGCCGCACAGgtgagtcatg ... gtttttgcagCCTGCCCTCTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
EST: gi|3768652|gb|AU032679.1|AU032679
EST:     TGGGTTTGACCGTGACGATAATTGTGATGAACTGGTTTCAAGCCGCACAG                         CCTGCCCTCTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
genomic: TGGGTTTGACCGTGACGATAATTGTGATGAACTGGTTTCAAGCCGCACAGgtgagtcatg ... gtttttgcagCCTGCCCTCTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
EST: gi|89190059|gb|CI013626.1|CI013626
EST:     TGGGTTTGACCGTGACGATAATTGTGATGAACTGGTTTCAAGCCGCACAG                         CCTGCCCTCTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
genomic: TGGGTTTGACCGTGACGATAATTGTGATGAACTGGTTTCAAGCCGCACAGgtgagtcatg ... gtttttgcagCCTGCCCTCTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
EST: gi|88263333|gb|CI367107.1|CI367107
EST:     CAAGCCGCACAG                         CCTGCCCTCTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
genomic: CAAGCCGCACAGgtgagtcatg ... gtttttgcagCCTGCCCTCTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
EST: gi|3764135|gb|AU030635.1|AU030635
EST:     TGGGTTTGACCGTGACGATAATTGTGATGAACTGGTTTCAAGCCGCACAG                         CCTGCCCTCTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
genomic: TGGGTTTGACCGTGACGATAATTGTGATGAACTGGTTTCAAGCCGCACAGgtgagtcatg ... gtttttgcagCCTGCCCTCTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
EST: gi|86505531|gb|CI148164.1|CI148164
EST:     TGGGTTTGACCGTGACGATAATTGTGATGAACTGGTTTCAAGCCGCACAG                         CCTGCCCTCTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
genomic: TGGGTTTGACCGTGACGATAATTGTGATGAACTGGTTTCAAGCCGCACAGgtgagtcatg ... gtttttgcagCCTGCCCTCTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
EST: gi|29629872|gb|CB634881.1|CB634881
EST:     TGGGTTTGACCGTGACGATAATTGTGATGAACTGGTTTCAAGCTGCACAG                         CCTGCCCTCTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
genomic: TGGGTTTGACCGTGACGATAATTGTGATGAACTGGTTTCAAGCCGCACAGgtgagtcatg ... gtttttgcagCCTGCCCTCTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
EST: gi|89180263|gb|CI044542.1|CI044542
EST:     TGGGTTTGACCGTGACGATAATTGTGATGAACTGGTTTCAAGCCGCACAG                         CCTGCCCTCTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
genomic: TGGGTTTGACCGTGACGATAATTGTGATGAACTGGTTTCAAGCCGCACAGgtgagtcatg ... gtttttgcagCCTGCCCTCTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
EST: gi|88841193|gb|CI080647.1|CI080647
EST:     AACTGGTTTCAAGCCGCACAG                         CCTGCCCTCTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
genomic: AACTGGTTTCAAGCCGCACAGgtgagtcatg ... gtttttgcagCCTGCCCTCTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
EST: gi|86431949|gb|CI085560.1|CI085560
EST:     TGGGTTTGACCGTGACGATAATTGTGATGAACTGGTTTCAAGCCGCACAG                         CCTGCCCTCTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
genomic: TGGGTTTGACCGTGACGATAATTGTGATGAACTGGTTTCAAGCCGCACAGgtgagtcatg ... gtttttgcagCCTGCCCTCTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
EST: gi|8858846|gb|AU096164.1|AU096164
EST:     TGGGTTTGACCGTGACGATAATTGTGATGAACTGGTTTCAAGCCGCACAG                         CCTGCCCTCTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
genomic: TGGGTTTGACCGTGACGATAATTGTGATGAACTGGTTTCAAGCCGCACAGgtgagtcatg ... gtttttgcagCCTGCCCTCTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
EST: gi|88974741|gb|CI023037.1|CI023037
EST:     TGGGTTTGACCGTGACGATAATTGTGATGAACTGGTTTCAAGCCGCACAG                         CCTGCCCTCTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
genomic: TGGGTTTGACCGTGACGATAATTGTGATGAACTGGTTTCAAGCCGCACAGgtgagtcatg ... gtttttgcagCCTGCCCTCTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
EST: gi|88268306|gb|CI378241.1|CI378241
EST:     ATAATTGTGATGAACTGGTTTCAAGCCGCACAAG                         CCTGCCCTCTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCA
genomic: ATAATTGTGATGAACTGGTTTCAAGCCGCAC-AGgtgagtcatg ... gtttttgcagCCTGCCCTCTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCA
EST: gi|88227079|gb|CI228559.1|CI228559
EST:     TGGGTTTGACCGTGACGATAATTGTGATGAACTGGTTTCAAGCCGCACAG                         CCTGCCCTCTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
genomic: TGGGTTTGACCGTGACGATAATTGTGATGAACTGGTTTCAAGCCGCACAGgtgagtcatg ... gtttttgcagCCTGCCCTCTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
EST: gi|88201253|gb|CI201608.1|CI201608
EST:     TGGGTTTGACCGTGACGATAATTGTGATGAACTGGTTTCAAGCCGCACAG                         CCTGCCCTCTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
genomic: TGGGTTTGACCGTGACGATAATTGTGATGAACTGGTTTCAAGCCGCACAGgtgagtcatg ... gtttttgcagCCTGCCCTCTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
EST: gi|86251700|gb|CI018892.1|CI018892
EST:     ATTGTGATGAACTGGTTTCAAGCCGCACAG                         CCTGCCCTCTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
genomic: ATTGTGATGAACTGGTTTCAAGCCGCACAGgtgagtcatg ... gtttttgcagCCTGCCCTCTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
EST: gi|87031167|gb|CI259747.1|CI259747
EST:     TGGGTTTGACCGTGACGATAATTGTGATGAACTGGTTTCAAGCCGCACAG                         CCTGCCCTCTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
genomic: TGGGTTTGACCGTGACGATAATTGTGATGAACTGGTTTCAAGCCGCACAGgtgagtcatg ... gtttttgcagCCTGCCCTCTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
EST: gi|88836000|gb|CI371105.1|CI371105
EST:     ATTGTGATGAACT-GTTTCAAGCCGCACAG                         CCTGCCCTCTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
genomic: ATTGTGATGAACTGGTTTCAAGCCGCACAGgtgagtcatg ... gtttttgcagCCTGCCCTCTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
EST: gi|89168583|gb|CI038937.1|CI038937
EST:     TGGGTTTGACCGTGACGATAATTGTGATGAACTGGTTTCAAGCCGCACAG                         CCTGCCCTCTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
genomic: TGGGTTTGACCGTGACGATAATTGTGATGAACTGGTTTCAAGCCGCACAGgtgagtcatg ... gtttttgcagCCTGCCCTCTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
EST: gi|86428283|gb|CI074964.1|CI074964
EST:     TGGGTTTGACCGTGACGATAATTGTGATGAACTGGTTTCAAGCCGCACAG                         CCTGCCCTCTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
genomic: TGGGTTTGACCGTGACGATAATTGTGATGAACTGGTTTCAAGCCGCACAGgtgagtcatg ... gtttttgcagCCTGCCCTCTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
EST: gi|29660567|gb|CB656842.1|CB656842
EST:     TGGGTTTGACCGTGACGATAATTGTGATGAACTGGTTTCAAGCCGCACAG                         CCTGCCCTCTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
genomic: TGGGTTTGACCGTGACGATAATTGTGATGAACTGGTTTCAAGCCGCACAGgtgagtcatg ... gtttttgcagCCTGCCCTCTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
EST: gi|29631479|gb|CB636488.1|CB636488
EST:     TGGGTTTGACCGTGACGATAATTGTGATGAACTGGTTTCAAGCCGCACAG                         CCTGCCCTCTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC
genomic: TGGGTTTGACCGTGACGATAATTGTGATGAACTGGTTTCAAGCCGCACAGgtgagtcatg ... gtttttgcagCCTGCCCTCTTGTACATTGTTCCTGGTGTGATTGGTTTTGTTGCTGTTCAC