1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ATCTGCTGAACATTCTAAGGAAAATTGGAGTAACAAGGTGATAGAATCTGCTGGTCCAAATTCAAGTGGAACAAAGATGTCTGACAGTATGCAAAGAAAGgtagcatacaaaacctagttctttgtatgtttcagctggtttactctgttagagctactcattgcctcgtcttttaaaacttaaaaggatattggatatt...
species | Oryza sativa |
transcript | LOC_Os02g02290.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CTGGTCCAAATTCAAGTGGAACAAAGATGTCTGACAGTATGCAAAGAAAG TGCAAGAACGTGATAAACAAGCTTTGGAGGAGGATTGACAAAGAGGGTCATEST: gi|86901526|gb|CI308507.1|CI308507
genomic: CTGGTCCAAATTCAAGTGGAACAAAGATGTCTGACAGTATGCAAAGAAAGgtagcataca ... atacctgcagTGCAAGAACGTGATAAACAAGCTTTGGAGGAGGATTGACAAAGAGGGTCAT
EST: CAAGTGGAACAAAGATGTCTGACAGTATGCAAAGAAAG TGCAAGAACGTGATAAACAAGCTTTGGAGGAGGATTGACAAAGAGGGTCATEST: gi|58690000|gb|CK078687.1|CK078687
genomic: CAAGTGGAACAAAGATGTCTGACAGTATGCAAAGAAAGgtagcataca ... atacctgcagTGCAAGAACGTGATAAACAAGCTTTGGAGGAGGATTGACAAAGAGGGTCAT
EST: CTGGTCCAAATTCAAGTGGAACAAAGATGTCTGACAGTATGCAAAGAAAG TGCAAGAACGTGATAAACAAGCTTTGGAGGAGGATTGACAAAGAGGGTCATEST: gi|44673834|gb|CR287268.1|CR287268
genomic: CTGGTCCAAATTCAAGTGGAACAAAGATGTCTGACAGTATGCAAAGAAAGgtagcataca ... atacctgcagTGCAAGAACGTGATAAACAAGCTTTGGAGGAGGATTGACAAAGAGGGTCAT
EST: CTGGTCCAAATTCAAGTGGAACAAAGATGTCTGACAGTATGCAAAGAAAG TGCAAGAACGTGATAAACAAGCTTTGGAGGAGGATTGACAAAGAGGGTCATEST: gi|29679434|gb|CB675709.1|CB675709
genomic: CTGGTCCAAATTCAAGTGGAACAAAGATGTCTGACAGTATGCAAAGAAAGgtagcataca ... atacctgcagTGCAAGAACGTGATAAACAAGCTTTGGAGGAGGATTGACAAAGAGGGTCAT
EST: CTGGTCCAAATTCAAGTGGAACAAAGATGTCTGACAGTATGCAAAGAAAG TGCAAGAACGTGATAAACAAGCTTTGGAGGAGGATTGACAAAGAGGGTCATEST: gi|58652411|gb|CK041091.1|CK041091
genomic: CTGGTCCAAATTCAAGTGGAACAAAGATGTCTGACAGTATGCAAAGAAAGgtagcataca ... atacctgcagTGCAAGAACGTGATAAACAAGCTTTGGAGGAGGATTGACAAAGAGGGTCAT
EST: CTGGTCCAAATTCAAGTGGAACAAAGATGTCTGACAGTATGCAAAGAAAG TGCAAGAACGTGATAAACAAGCTTTGGAGGAGGATTGACAAAGAGGGTCATEST: gi|58674239|gb|CK062925.1|CK062925
genomic: CTGGTCCAAATTCAAGTGGAACAAAGATGTCTGACAGTATGCAAAGAAAGgtagcataca ... atacctgcagTGCAAGAACGTGATAAACAAGCTTTGGAGGAGGATTGACAAAGAGGGTCAT
EST: CTGGTCCAAATTCAAGTGGAACAAAGATGTCTGACAGTATGCAAAGAAAG TGCAAGAACGTGATAAACAAGCTTTGGAGGAGGATTGACAAAGAGGGTCAT
genomic: CTGGTCCAAATTCAAGTGGAACAAAGATGTCTGACAGTATGCAAAGAAAGgtagcataca ... atacctgcagTGCAAGAACGTGATAAACAAGCTTTGGAGGAGGATTGACAAAGAGGGTCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCTGCTGAACATTCTAAGGAAAATTGGAGTAACAAGGTGATAGAATCTGCTGGTCCAAATTCAAGTGGAACAAAGATGTCTGACAGTATGCAAAGAAAGgtagcatacaaaacctagttctttgtatgtttcagctggtttactctgttagagctactcattgcctcgtcttttaaaacttaaaaggatattggatatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA