1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATCCAGAATTAGTTTCTTTGTTGCCCGTGTGACATAATAGGTTGAGGCTACCAGCCGCTGTGGACAAAGCTTGAAGGACAGAGTCTCCCTTCAGACACAGgtgctgaactggagtatttctcatgttaaatactcccatatatataagctgatacataaatagataatgtagtattggtttttgcag
species | Oryza sativa |
transcript | LOC_Os02g01170.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CCAGCCGCTGTGGACAAAGCTTGAAGGACAGAGTCTCCCTTCAGACACAG TGAAATCAAGTTCCATATATGTGGCGTGGGCAGCCTCGCGAGCACCGAGAAEST: gi|88847007|gb|CI001279.1|CI001279
genomic: CCAGCCGCTGTGGACAAAGCTTGAAGGACAGAGTCTCCCTTCAGACACAGgtgctgaact ... gtttttgcagTGAAATCAAGTTCCATATATGTGGCGTGGGCAGCCTCGCGAGCACCGAGAA
EST: CCAGCCGCTGTGGACAAAGCTTGAAGGACAGAGTCTCCCTTCAGACACAG TGAAATCAAGTTCCATATATGTGGCGTGGGCAGCCTCGCGAGCACCGAGAAEST: gi|29664291|gb|CB660566.1|CB660566
genomic: CCAGCCGCTGTGGACAAAGCTTGAAGGACAGAGTCTCCCTTCAGACACAGgtgctgaact ... gtttttgcagTGAAATCAAGTTCCATATATGTGGCGTGGGCAGCCTCGCGAGCACCGAGAA
EST: CCAGCCGCTGTGGACAAAGCTTGAAGGACAGAGTCTCCCTTCAGACACAG TGAAATCAAGTTCCATATATGTGGCGTGGGCAGCCTCGCGAGCACCGAGAAEST: gi|88837611|gb|CI078971.1|CI078971
genomic: CCAGCCGCTGTGGACAAAGCTTGAAGGACAGAGTCTCCCTTCAGACACAGgtgctgaact ... gtttttgcagTGAAATCAAGTTCCATATATGTGGCGTGGGCAGCCTCGCGAGCACCGAGAA
EST: CCAGCCGCTGTGGACAAAGCTTGAAGGACAGAGTCTCCCTTCAGACACAG TGAAATCAAGTTCCATATATGTGGCGTGGGCAGCCTCGCGAGCACCGAGAAEST: gi|29678538|gb|CB674813.1|CB674813
genomic: CCAGCCGCTGTGGACAAAGCTTGAAGGACAGAGTCTCCCTTCAGACACAGgtgctgaact ... gtttttgcagTGAAATCAAGTTCCATATATGTGGCGTGGGCAGCCTCGCGAGCACCGAGAA
EST: CCAGCCGCTGTGGACAAAGCTTGAAGGACAGAGTCTCCCTTCAGACACAG TGAAATCAAGTTCCATATATGTGGCGTGGGCAGCCTCGCGAGCACCGAGAAEST: gi|29670955|gb|CB667230.1|CB667230
genomic: CCAGCCGCTGTGGACAAAGCTTGAAGGACAGAGTCTCCCTTCAGACACAGgtgctgaact ... gtttttgcagTGAAATCAAGTTCCATATATGTGGCGTGGGCAGCCTCGCGAGCACCGAGAA
EST: CCAGCCGCTGTGGACAAAGCTTGAAGGACAGAGTCTCCCTTCAGACACAG TGAAATCAAGTTCCATATATGTGGCGTGGGCAGCCTCGCGAGCACCGAGAAEST: gi|58594862|gb|CF993170.1|CF993170
genomic: CCAGCCGCTGTGGACAAAGCTTGAAGGACAGAGTCTCCCTTCAGACACAGgtgctgaact ... gtttttgcagTGAAATCAAGTTCCATATATGTGGCGTGGGCAGCCTCGCGAGCACCGAGAA
EST: CCAGCCGCTGTGGACAAAGCTTGAAGGACAGAGTCTCCCTTCAGACACAG TGAAATCAAGTTCCATATATGTGGCGTGGGCAGCCTCGCGAGCACCGAGAAEST: gi|66922255|gb|CX109103.1|CX109103
genomic: CCAGCCGCTGTGGACAAAGCTTGAAGGACAGAGTCTCCCTTCAGACACAGgtgctgaact ... gtttttgcagTGAAATCAAGTTCCATATATGTGGCGTGGGCAGCCTCGCGAGCACCGAGAA
EST: CCAGCCGCTGTGGACAAAGCTTGAAGGACAGAGTCTCCCTTCAGACACAG TGAAATCAAGTTCCATATATGTGGCGTGGGCAGCCTCAGACGAGCACCGAGEST: gi|29640685|gb|CB645694.1|CB645694
genomic: CCAGCCGCTGTGGACAAAGCTTGAAGGACAGAGTCTCCCTTCAGACACAGgtgctgaact ... gtttttgcagTGAAATCAAGTTCCATATATGTGGCGTGGGCAGCCTC-G-CGAGCACCGAG
EST: CCAGCCGCTGTGGACAAAGCTTGAAGGACAGAGTCTCCCTTCAGACACAG TGAAATCAAGTTCCATATATGTGGCGTGGGCAGCCTCGCGAGCACCGAGAAEST: gi|29628307|gb|CB633318.1|CB633318
genomic: CCAGCCGCTGTGGACAAAGCTTGAAGGACAGAGTCTCCCTTCAGACACAGgtgctgaact ... gtttttgcagTGAAATCAAGTTCCATATATGTGGCGTGGGCAGCCTCGCGAGCACCGAGAA
EST: CCAGCCGCTGTGGACAAAGCTTGAAGGACAGAGTCTCCCTTCAGACACAG TGAAATCAAGTTCCATAT--GTGGCGTGGGCAGCCTCGCGAGCACCGAGAAEST: gi|86424983|gb|CI070080.1|CI070080
genomic: CCAGCCGCTGTGGACAAAGCTTGAAGGACAGAGTCTCCCTTCAGACACAGgtgctgaact ... gtttttgcagTGAAATCAAGTTCCATATATGTGGCGTGGGCAGCCTCGCGAGCACCGAGAA
EST: CCAGCCGCTGTGGACAAAGCTTGAAGGACAGAGTCTTCCTTCAGACACAG TGAAATCAAGTTCCATATATGTGGCGTGGGCAGCCTCGCGAGCACCGAGAAEST: gi|25807633|gb|CA763594.1|CA763594
genomic: CCAGCCGCTGTGGACAAAGCTTGAAGGACAGAGTCTCCCTTCAGACACAGgtgctgaact ... gtttttgcagTGAAATCAAGTTCCATATATGTGGCGTGGGCAGCCTCGCGAGCACCGAGAA
EST: CCAGCCGCTGTGGACAAAGCTTGAAGGACAGAGTCTCCCTTCAGACACAG TGAAATCAAGTTCCATATATGTGGCGTGGGCAGCCTCGCGAGCACCGAGAA
genomic: CCAGCCGCTGTGGACAAAGCTTGAAGGACAGAGTCTCCCTTCAGACACAGgtgctgaact ... gtttttgcagTGAAATCAAGTTCCATATATGTGGCGTGGGCAGCCTCGCGAGCACCGAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCCAGAATTAGTTTCTTTGTTGCCCGTGTGACATAATAGGTTGAGGCTACCAGCCGCTGTGGACAAAGCTTGAAGGACAGAGTCTCCCTTCAGACACAGgtgctgaactggagtatttctcatgttaaatactcccatatatataagctgatacataaatagataatgtagtattggtttttgcag
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