1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGAGCCTACCTACAACAAGCTAGGAAAGCATCTCCGTGGCATTGACTCCCTTGTAATAGCTAAAATGGATGGCACTGCCAATGAGCATCCACGTGCAAAGgtctgttctgcttcctgttggttttggcagtttcacttcacttttctttgaactggatattagaaagtaaaatttggaggcacgaaatgaagagtttaat...
species | Oryza sativa |
transcript | LOC_Os02g01010.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CTAAAATGGATGGCACTGCCAATGAGNATCCACGTGCAAAG CCTGATGGATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTEST: gi|86893336|gb|CI313437.1|CI313437
genomic: CTAAAATGGATGGCACTGCCAATGAGCATCCACGTGCAAAGgtctgttctg ... cttgtcacagCCTGATGGATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTT
EST: CATCCACGTGCAAAG CCTGATGGATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTEST: gi|15849945|gb|BI798221.1|BI798221
genomic: CATCCACGTGCAAAGgtctgttctg ... cttgtcacagCCTGATGGATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTT
EST: TAATA-CTAAAATGGATGCCACT-CCAATGAGCATCCACGTCCAAA- CCTGATGGATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTEST: gi|86546649|gb|CI186855.1|CI186855
genomic: TAATAGCTAAAATGGATGGCACTGCCAATGAGCATCCACGTGCAAAGgtctgttctg ... cttgtcacagCCTGATGGATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTT
EST: TGAGCATCCACGTGCAAAG CCTGATGGATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTEST: gi|15850569|gb|BI798845.1|BI798845
genomic: TGAGCATCCACGTGCAAAGgtctgttctg ... cttgtcacagCCTGATGGATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTT
EST: TTGTAATAGCTAAAATGGAT-GCACTGCCAATGAGCATCCACGT-CAAAG CCTGATGGATTCCCAACGATGCCTCTTTTATCCAGCAGGAAAGAAAAGTTTEST: gi|89193503|gb|CI050801.1|CI050801
genomic: TTGTAATAGCTAAAATGGATGGCACTGCCAATGAGCATCCACGTGCAAAGgtctgttctg ... cttgtcacagCCTGATGGATTCCCAACGAT-CCTCTTTTATCCAGCAGGAAAGAAAAGTTT
EST: AGCTAAAATGGATGGCACTGCCAATGAGCATCCACGTGCAAAG CCTGATGGATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTEST: gi|87034915|gb|CI188718.1|CI188718
genomic: AGCTAAAATGGATGGCACTGCCAATGAGCATCCACGTGCAAAGgtctgttctg ... cttgtcacagCCTGATGGATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTT
EST: TTGTAATAGCTAAAATGGATGGCACTGCCAATGAGCATCCACGTGCAAAG CCTGATGGATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTEST: gi|2797997|gb|AA751291.1|AA751291
genomic: TTGTAATAGCTAAAATGGATGGCACTGCCAATGAGCATCCACGTGCAAAGgtctgttctg ... cttgtcacagCCTGATGGATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTT
EST: CTGCCAATGAGCATCCACGTGCAAAG CCTGATGGATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTEST: gi|66916422|gb|CX103270.1|CX103270
genomic: CTGCCAATGAGCATCCACGTGCAAAGgtctgttctg ... cttgtcacagCCTGATGGATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTT
EST: TTGTAATAGCTAAAATGGATGGCACTGCCAATGAGCATCCACGTGCAAAG CCTGATGGATTCCCAACGATCCTCTAAAATCCAGCAGGAAAGAAAEST: gi|86545063|gb|CI185269.1|CI185269
genomic: TTGTAATAGCTAAAATGGATGGCACTGCCAATGAGCATCCACGTGCAAAGgtctgttctg ... cttgtcacagCCTGATGGATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAA
EST: GTAATAGCTAAAATGGATGGCACTGCCAATGAGCATCCACGTGCAAAG CCTGATGGATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTEST: gi|29660339|gb|CB656614.1|CB656614
genomic: GTAATAGCTAAAATGGATGGCACTGCCAATGAGCATCCACGTGCAAAGgtctgttctg ... cttgtcacagCCTGATGGATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTT
EST: TTGTAATAGCTAAAATGGATGGCACTGCCAATGAGCATCCACGTGCAAAG CCTGATGGATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTEST: gi|86511920|gb|CI154553.1|CI154553
genomic: TTGTAATAGCTAAAATGGATGGCACTGCCAATGAGCATCCACGTGCAAAGgtctgttctg ... cttgtcacagCCTGATGGATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTT
EST: ATCCACGTGCAAAG CCTGATGGATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTEST: gi|89184057|gb|CI046622.1|CI046622
genomic: ATCCACGTGCAAAGgtctgttctg ... cttgtcacagCCTGATGGATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTT
EST: TTGTAATAGCTAAAATGGATGGCACTGCCAATGAGCATCCACGTGCAAAG CCTGATGGATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTEST: gi|58681044|gb|CK069731.1|CK069731
genomic: TTGTAATAGCTAAAATGGATGGCACTGCCAATGAGCATCCACGTGCAAAGgtctgttctg ... cttgtcacagCCTGATGGATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTT
EST: TTGTAATAGCTAAAATGGATGGCACTGCCAATGAGCATCCACGTGCAAAG CCTGATGGATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTEST: gi|86493340|gb|CI135973.1|CI135973
genomic: TTGTAATAGCTAAAATGGATGGCACTGCCAATGAGCATCCACGTGCAAAGgtctgttctg ... cttgtcacagCCTGATGGATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTT
EST: TTGTAATAGCTAAAATGGATGGCACTGCCAATGAGCATCCACGTGCAAAG CCTGATGGATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTEST: gi|86509792|gb|CI152425.1|CI152425
genomic: TTGTAATAGCTAAAATGGATGGCACTGCCAATGAGCATCCACGTGCAAAGgtctgttctg ... cttgtcacagCCTGATGGATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTT
EST: TGCCAATGAGCATCCACGTGCAAAG CCTGATGGATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTTEST: gi|88839098|gb|CI378022.1|CI378022
genomic: TGCCAATGAGCATCCACGTGCAAAGgtctgttctg ... cttgtcacagCCTGATGGATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTT
EST: AGCTTAAATGGATGCCCCTGCCAATGAGCATCCACGTGCAAAG CCTGAT-GATTCCCAACGATCCTCTTTTATCCACCAGGAAAGAAAAGTTTTEST: gi|88250194|gb|CI250471.1|CI250471
genomic: AGCTAAAATGGATGGCACTGCCAATGAGCATCCACGTGCAAAGgtctgttctg ... cttgtcacagCCTGATGGATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTT
EST: TTGTAATAGCTAAAATGGATGGCACTGCCAATGAGCATCCACGTGCAAAG CCTGATGGATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTT
genomic: TTGTAATAGCTAAAATGGATGGCACTGCCAATGAGCATCCACGTGCAAAGgtctgttctg ... cttgtcacagCCTGATGGATTCCCAACGATCCTCTTTTATCCAGCAGGAAAGAAAAGTTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGCCTACCTACAACAAGCTAGGAAAGCATCTCCGTGGCATTGACTCCCTTGTAATAGCTAAAATGGATGGCACTGCCAATGAGCATCCACGTGCAAAGgtctgttctgcttcctgttggttttggcagtttcacttcacttttctttgaactggatattagaaagtaaaatttggaggcacgaaatgaagagtttaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG