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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGTTGGTATGGTGGAGAGAGACAAGAATCATGCATGCATTATAGTATGGTCCTTGGGAAATGAATCTTCGTATGGACCAAATCACTCAGCCATGTCTGgtaaaatattcttcactgtgatagttcagttaatgatattttttgacgcatctaagagatcacattcttgtag

Basic information

species Oryza sativa
transcript LOC_Os01g72340.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g72340.2 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G032496_T01 (Zea mays), 5'ss of exon 2
GTTGTTGGTATGGTGGAGAGAGACAAGAATCATGCATGCATTATAGTATGGTCCTTGGGAAATGAATCTTCGTATGGACCAAATCACTCAGCCATGTCTGgtaaaatattcttcactgtgatagttcagttaatgatattttttgacgcatctaagagatcacattcttgtag
|||||| | |||||||||||||| |||||||||||||||||||| || |||||  | |||||||||||||| |||||||| |||||  |  ||||||||||||||||||||||  ||||   |||| | ||  || || || |     |||||||  | | |||||||| |||
GTTGTTAGCATGGTGGAGAGAGATAAGAATCATGCATGCATTATTGTTTGGTCTCTAGGAAATGAATCTTCATATGGACCTAATCATGCTTCCATGTCTGgtaaaatattcttacctgt--cagtttaatttctg-tacttct-----catctaat-ggtaacattcttctag

upper sequence: LOC_Os01g72340.2 (Oryza sativa), 5'ss of exon 10
lower sequence: Vv13s0067g03000.t01 (Vitis vinifera), 5'ss of exon 9
GTTGTTGGTATGGTGGAGAGAGACAAGAATCATGCATGCATTATAGTATGGTCCTTGGGAAATGAATCTTCGTATGGACCAAATCACTCAGCCATGTCTGgtaaaatattcttcactgtgatagttcagttaatgatattttttgac--gcatct-----aagagatcacattcttgtag----------------------
||  |  | ||||||||||| ||||| |||||||||||||||||    ||||||||||||||||| |||   |||||||| ||||| || ||  || ||||||  |  || |||| | |  |  |  | ||| | | || | |   |  ||| ||     ||   || |||      |                        
GTGATAAGCATGGTGGAGAGGGACAAAAATCATGCATGCATTATTTCTTGGTCCTTGGGAAATGAGTCTGGTTATGGACCTAATCATTCTGCTTTGGCTGgtatgaggtttttcattat--tcatataattatttacatctgtcagcaagcaacttctacaaataataacagctacttcatctttaacatcaagcccaacac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58692909|gb|CK081596.1|CK081596
EST:     GTCCTTGGGAAATGAATCTTCGTATGGACCAAATCACTCAGCCATGTCTG                         GCTGGATTCGTGGAAAGGACCCGACAAGGCCCATCCATTATGAAGGAGGTG
genomic: GTCCTTGGGAAATGAATCTTCGTATGGACCAAATCACTCAGCCATGTCTGgtaaaatatt ... attcttgtagGCTGGATTCGTGGAAAGGACCCGACAAGGCCCATCCATTATGAAGGAGGTG
EST: gi|38568808|gb|CD671023.1|CD671023
EST:     GGGAAATGAATCTTCGTATGGACCAAATCACTCAGCCATGTCTG                         GCTGGATTCGTGGAAAGGACCCGACAAGGCCCATCCATTATGAAGGAGGTG
genomic: GGGAAATGAATCTTCGTATGGACCAAATCACTCAGCCATGTCTGgtaaaatatt ... attcttgtagGCTGGATTCGTGGAAAGGACCCGACAAGGCCCATCCATTATGAAGGAGGTG
EST: gi|29657376|gb|CB653651.1|CB653651
EST:     GTCCTTGGGAAATGAATCTTCGTATGGACCAAATCACTCAGCCATGTCTG                         GCTGGATTCGTGGAAAGGACCCGACAAGGCCCATCCATTATGAAGGAGGTG
genomic: GTCCTTGGGAAATGAATCTTCGTATGGACCAAATCACTCAGCCATGTCTGgtaaaatatt ... attcttgtagGCTGGATTCGTGGAAAGGACCCGACAAGGCCCATCCATTATGAAGGAGGTG