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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCCAAGACAGATCCACCACCTGGTAAGgtatggtttcccatcgatgtctgttagatatgctgctgtgttgaactgtttcaaacctgaaaaataccaaaataggaattttcatctaattcaacatatt...

Basic information

species Oryza sativa
transcript LOC_Os01g70520.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29614529|gb|CB619542.1|CB619542
EST:     GTTCCAAGACAGATCCACCACCTGGTAAG                         GCCGCTCCAACATCTATTGGACCTGACCCACAAGGATTGAGATTGATGGTG
genomic: GTTCCAAGACAGATCCACCACCTGGTAAGgtatggtttc ... cggagcgcagGCCGCTCCAACATCTATTGGACCTGACCCACAAGGATTGAGATTGATGGTG
EST: gi|29619010|gb|CB624022.1|CB624022
EST:     GTTCCAAGACAGATCCACCACCTGGTAAG                         GCCGCTCCAACATCTATTGGACCTGACCCACAAGGATTGAGATTGATGGTG
genomic: GTTCCAAGACAGATCCACCACCTGGTAAGgtatggtttc ... cggagcgcagGCCGCTCCAACATCTATTGGACCTGACCCACAAGGATTGAGATTGATGGTG
EST: gi|29612789|gb|CB617802.1|CB617802
EST:     GTTCCAAGACAGATCCACCACCTGGTAAG                         GCCGCTCCAACATCTATTGGACCTGACCCACAAGGATTGAGATTGATGGTG
genomic: GTTCCAAGACAGATCCACCACCTGGTAAGgtatggtttc ... cggagcgcagGCCGCTCCAACATCTATTGGACCTGACCCACAAGGATTGAGATTGATGGTG
EST: gi|29620624|gb|CB625635.1|CB625635
EST:     GTTCCAAGACAGATCCACCACCTGGTAAG                         GCCGCTCCAACATCTATTGGACCTGACCCACAAGGATTGAGATTGATGGTG
genomic: GTTCCAAGACAGATCCACCACCTGGTAAGgtatggtttc ... cggagcgcagGCCGCTCCAACATCTATTGGACCTGACCCACAAGGATTGAGATTGATGGTG