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TTGTACAATATTTGCACCACTCAGTTTAGCCGATCGGTAAATTTCCTTAAAGCTGCTGTAGCTCGTTCGCCAGATTGCAGCTATGTGTGGTCAAATCTTGgtaagttttgatctagttcaatcctgtttatatctctatagtcaaataaaccaccacattggaacaatgagttataccaaggttcttccacactctttga...
species | Oryza sativa |
transcript | LOC_Os01g67920.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AGCTGCTGTAGCTCGTTCGCCAGATTGCAGCTATGTGTGGTCAAATCTTG GTATTGCATTGCAACTATCAGACGATTCATCCTGTGAGACTGTATATAAACEST: gi|14571444|gb|BI118812.1|BI118812
genomic: AGCTGCTGTAGCTCGTTCGCCAGATTGCAGCTATGTGTGGTCAAATCTTGgtaagttttg ... gttgtcacagGTATTGCATTGCAACTATCAGACGATTCATCCTGTGAGACTGTATATAAAC
EST: AGCTGCTGTAGCTCGTTCGCCAGATTGCAGCTATGTGTGGTCAAATCTTG GTATTGCATTGCAACTATCAGACGATTCATCCTGTGAGACTGTATATAAACEST: gi|58612799|gb|CK040511.1|CK040511
genomic: AGCTGCTGTAGCTCGTTCGCCAGATTGCAGCTATGTGTGGTCAAATCTTGgtaagttttg ... gttgtcacagGTATTGCATTGCAACTATCAGACGATTCATCCTGTGAGACTGTATATAAAC
EST: AGCTGCTGTAGCTCGTTCGGGGGATTGCAGCTATGTGTGGTCCAATCTTG GTATTGCATTGCAACTATCAGACGATTCATCCTGTGAGACTGTATATAAACEST: gi|29641528|gb|CB646535.1|CB646535
genomic: AGCTGCTGTAGCTCGTTCGCCAGATTGCAGCTATGTGTGGTCAAATCTTGgtaagttttg ... gttgtcacagGTATTGCATTGCAACTATCAGACGATTCATCCTGTGAGACTGTATATAAAC
EST: AGCTGCTGTAGCTCGTTCGCCAGATTGCAGCTATGTGTGGTCAAATCTTG GTATTGCATTGCAACTATCAGACGATTCATCCTGTGAGACTGTATATAAACEST: gi|58663420|gb|CK052106.1|CK052106
genomic: AGCTGCTGTAGCTCGTTCGCCAGATTGCAGCTATGTGTGGTCAAATCTTGgtaagttttg ... gttgtcacagGTATTGCATTGCAACTATCAGACGATTCATCCTGTGAGACTGTATATAAAC
EST: AGCTGCTGTAGCTCGTTCGCCAGATTGCAGCTATGTGTGGTCAAATCTTG GTATTGCATTGCAACTATCAGACGATTCATCCTGTGAGACTGTATATAAAC
genomic: AGCTGCTGTAGCTCGTTCGCCAGATTGCAGCTATGTGTGGTCAAATCTTGgtaagttttg ... gttgtcacagGTATTGCATTGCAACTATCAGACGATTCATCCTGTGAGACTGTATATAAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGTACAATATTTGCACCACTCAGTTTAGCCGATCGGTAAATTTCCTTAAAGCTGCTGTAGCTCGTTCGCCAGATTGCAGCTATGTGTGGTCAAATCTTGgtaagttttgatctagttcaatcctgtttatatctctatagtcaaataaaccaccacattggaacaatgagttataccaaggttcttccacactctttga
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaccac