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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATATCTTCCATTTTTGCAAAACCTTATGATCAAACTATTTGTAACATTTGTTTACTTTTTGCAGAAAAATGGAACACTGGTGAAAAAATTGGTGAAAGGgtcagaactgatctctctctctctctctctctctctcgtgtaaattctgtggattatgtcctaacatatcatgtcaacatttttgcag

Basic information

species Oryza sativa
transcript LOC_Os01g67220.3
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g67220.3 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G044092_T01 (Zea mays), 5'ss of exon 10
GATATCTTCCATTTTTGCAAAACCTTATGATCAAACTATTTGTAACATTTGTTTACTTTTTGCAGAAAAATGGAACACTGGTGAAAAAATTGGTGAAAGGgtcagaactgatctctctctctctctctctctctctcgtgtaaattctgtggattatgtcctaacatatcatgtcaacatttttgcag
                                                                 |||||||||| | |||||||||||||||||||||||||||||     | ||     ||| ||||     |  ||||||||| | ||| || | ||||||||||   | |||| |||| |||||
-----------------------------------------------------------------AAAAATGGAATAGTGGTGAAAAAATTGGTGAAAGGgtcagaatgctgcactgaacttctttctc-----cgtgtgtaaattatctgg-ttctctcctaacatactgtctcaa-atttgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29625132|gb|CB630143.1|CB630143
EST:     GTTTACTTTTTGCAGAAAAATGGAACACCGGTGAAAAAATTGGTGAAAGG                         GCCGCATCTGAGTGGCTTTTCATAGTTCCTTGGGGCCTCCGGAAATTACTT
genomic: GTTTACTTTTTGCAGAAAAATGGAACACTGGTGAAAAAATTGGTGAAAGGgtcagaactg ... atttttgcagGCCGCATCTGAGTGGCTTTTCATAGTTCCTTGGGGCCTCCGGAAATTACTT
EST: gi|25806962|gb|CA762923.1|CA762923
EST:     AGAAAAATGGAACACCGGGTGAAAAAATTGGTGAAAGG                         GCCGCATTTGAGTGGCTTTTCATAGTTCCTTGGGGCCTCCGGAAATTACTT
genomic: AGAAAAATGGAACA-CTGGTGAAAAAATTGGTGAAAGGgtcagaactg ... atttttgcagGCCGCATCTGAGTGGCTTTTCATAGTTCCTTGGGGCCTCCGGAAATTACTT