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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTCTTAAAGAGGCAATGGCTTCAGTGGAGAATTATCTTCAGAACCTGAATCTCTCTCTTCTTAAAATACGCACAATCTTTTTAGCAGGCCAACCTGAGgtatgatgaaataaatctcattctcaactaaaaataacaaatacgagtaagtaattcttgataattcttgtttgatcatatgacag

Basic information

species Oryza sativa
transcript LOC_Os01g64870.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g64870.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G141185_T01 (Zea mays), 5'ss of exon 8
AGCTCTTAAAGAGGCAATGGCTTCAGTGGAGAATTATCTTCAGAACCTGAATCTCTCTCTTCTTAAAATACGCACAATCTTTTTAGCAGGCCAACCTGAGgtatgatgaaataaatctcattctcaactaaaaataacaaatacgagtaagtaattcttgataattcttgtttgatcatatgacag----------------------------------------------------------------------------------------
||| ||||||||||||||||| |||||||| |||||||| ||||| |||||| |||| || || || || ||||| ||| || |||| ||||||||||||||| ||| |||| | |    ||      || |  |     ||   |   | | | | |   || | | ||   ||   ||     |                                                                                        
AGCCCTTAAAGAGGCAATGGCCTCAGTGGAAAATTATCTCCAGAATCTGAATGTCTCCCTGCTGAAGATCCGCACGATCCTTCTAGCTGGCCAACCTGAGgtaagataaaatga-ttgtgttggtgcgtatacgtgcactatcttaaagattgactttgtgta-tacgtgcacgaaggtaatcttgtgcataggatacgttcttttattaataagctgtcggttaatggatacctcgatataccccccctaagtatttgttggtcttttgacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88831219|gb|CI082029.1|CI082029
EST:     ATCTCTCTCTTCTTAAAATACGCACAATCTTTTTAGCAGGCCAACCTGAG                         GTAACGACTCAGGTTGCTCTTGTTCTTCTAGCATCATCTGCTGTTCTTCTT
genomic: ATCTCTCTCTTCTTAAAATACGCACAATCTTTTTAGCAGGCCAACCTGAGgtatgatgaa ... catatgacagGTAACGACTCAGGTTGCTCTTGTTCTTCTAGCATCATCTGCTGTTCTTCTT
EST: gi|88834173|gb|CI000537.1|CI000537
EST:     ATCTCTCTCTTCTTAAAATACGCACAATCTTTTTAGCAGGCCAACCTGAG                         GTAACGACTCAGGTTGCTCTTGTTCTTCTAGCATCATCTGCTGTTCTTCTT
genomic: ATCTCTCTCTTCTTAAAATACGCACAATCTTTTTAGCAGGCCAACCTGAGgtatgatgaa ... catatgacagGTAACGACTCAGGTTGCTCTTGTTCTTCTAGCATCATCTGCTGTTCTTCTT
EST: gi|29644942|gb|CB649949.1|CB649949
EST:     ATCTCTCTCTTCTTAAAATACGCACAATCTTTTTAGCAGGCCAACCTGAG                         GTAACGACTCAGGTTGCTCTTGTTCTTCTAGCATCATCTGCTGTTCTTCTT
genomic: ATCTCTCTCTTCTTAAAATACGCACAATCTTTTTAGCAGGCCAACCTGAGgtatgatgaa ... catatgacagGTAACGACTCAGGTTGCTCTTGTTCTTCTAGCATCATCTGCTGTTCTTCTT
EST: gi|29676306|gb|CB672581.1|CB672581
EST:     ATCTCTCTCTTCTTAAAATACGCACAATCTTTTTAGCAGGCCAACCTGAG                         GTAACGACTCAGGTTGCTCTTGTTCTTTTAGCATCATCTGCTGTTCTTCTT
genomic: ATCTCTCTCTTCTTAAAATACGCACAATCTTTTTAGCAGGCCAACCTGAGgtatgatgaa ... catatgacagGTAACGACTCAGGTTGCTCTTGTTCTTCTAGCATCATCTGCTGTTCTTCTT
EST: gi|88273238|gb|CI388694.1|CI388694
EST:     ATCTCTCTCTTCTTAAAATACGCACAATCTTTTTAGCAGGCCAACCTGAG                         GTAACGACTCAGGTTGCTCTTGTTCTTCTAGCATCATCTGCTGTTCTTCTT
genomic: ATCTCTCTCTTCTTAAAATACGCACAATCTTTTTAGCAGGCCAACCTGAGgtatgatgaa ... catatgacagGTAACGACTCAGGTTGCTCTTGTTCTTCTAGCATCATCTGCTGTTCTTCTT
EST: gi|86832979|gb|CI333578.1|CI333578
EST:     ATCTCTCTCTTCTTAAAATACGCACAATCTTTTTAGCAGGCCAACCTGAG                         GTAACGACTCAGGGTTGCTCTTGTTCTTCTAGCATCATCTGCTGTTCTTCT
genomic: ATCTCTCTCTTCTTAAAATACGCACAATCTTTTTAGCAGGCCAACCTGAGgtatgatgaa ... catatgacagGTAACGACTCA-GGTTGCTCTTGTTCTTCTAGCATCATCTGCTGTTCTTCT
EST: gi|88276134|gb|CI396738.1|CI396738
EST:     ATCTCTCTCTTCTTAAAATACGCACAATCTTTTTAGCAGGCCAACCTGAG                         GTAACGACTCAGGTTGCTCTTGTTCTTCTAGCATCATCTGCTGTTCTTCTT
genomic: ATCTCTCTCTTCTTAAAATACGCACAATCTTTTTAGCAGGCCAACCTGAGgtatgatgaa ... catatgacagGTAACGACTCAGGTTGCTCTTGTTCTTCTAGCATCATCTGCTGTTCTTCTT
EST: gi|86864012|gb|CI332934.1|CI332934
EST:     ATCTCTCTCTTCTTAAAATACGCACAATCTTTTTAGCAGGCCAACCTGAG                         GTAACGACTCAGGTTGCTCTTGTTCTTCTAGCATCATCTGCTGTTCTTCTT
genomic: ATCTCTCTCTTCTTAAAATACGCACAATCTTTTTAGCAGGCCAACCTGAGgtatgatgaa ... catatgacagGTAACGACTCAGGTTGCTCTTGTTCTTCTAGCATCATCTGCTGTTCTTCTT
EST: gi|86872132|gb|CI333293.1|CI333293
EST:     TCTCTTCTTAAAATACGCACAATCTTTTTAGCAGGCCAACCTGAG                         -TAACGACTCAGGTTGCTCTTGTTCTTCTAGCATCATCTGCTGTTCTTCTT
genomic: TCTCTTCTTAAAATACGCACAATCTTTTTAGCAGGCCAACCTGAGgtatgatgaa ... catatgacagGTAACGACTCAGGTTGCTCTTGTTCTTCTAGCATCATCTGCTGTTCTTCTT
EST: gi|29623236|gb|CB628247.1|CB628247
EST:     ATCTCTCTCTTCTTAAAATACGCACAATCTTTTTAGCAGGCCAACCTGAG                         GTAACGACTCAGGTTGCTCTTGTTCTTCTAGCATCATCTGCTGTTCTTCTT
genomic: ATCTCTCTCTTCTTAAAATACGCACAATCTTTTTAGCAGGCCAACCTGAGgtatgatgaa ... catatgacagGTAACGACTCAGGTTGCTCTTGTTCTTCTAGCATCATCTGCTGTTCTTCTT
EST: gi|88447040|gb|CI531283.1|CI531283
EST:     TAGCAGGCCAACCTGAG                         GTAACGACTCAGGTTGCTCTTGTTCTTCTAGCATCATCTGCTGTTCTTCTT
genomic: TAGCAGGCCAACCTGAGgtatgatgaa ... catatgacagGTAACGACTCAGGTTGCTCTTGTTCTTCTAGCATCATCTGCTGTTCTTCTT
EST: gi|29640469|gb|CB645478.1|CB645478
EST:     ATCTCTCTCTTCTTAAAATACGCACAATCTTTTTAGCAGGCCAACCTGAG                         GTAACGACTCAGGTTGCTCTTGTTCTTCTAGCATCATCTGCTGTTCTTCTT
genomic: ATCTCTCTCTTCTTAAAATACGCACAATCTTTTTAGCAGGCCAACCTGAGgtatgatgaa ... catatgacagGTAACGACTCAGGTTGCTCTTGTTCTTCTAGCATCATCTGCTGTTCTTCTT
EST: gi|88292036|gb|CI532628.1|CI532628
EST:     TCTCTCTCTTCTTAAAATACGCACAATCTTTTTAGCAGGCCAACCTGAG                         GTAACGACTCAGGTTGCTCTTGTTCTTCTAGCATCATCTGCTGTTCTTCTT
genomic: TCTCTCTCTTCTTAAAATACGCACAATCTTTTTAGCAGGCCAACCTGAGgtatgatgaa ... catatgacagGTAACGACTCAGGTTGCTCTTGTTCTTCTAGCATCATCTGCTGTTCTTCTT
EST: gi|88527709|gb|CI455887.1|CI455887
EST:     ATCTCTCTCTTCTTAAAATACGCACAATCTTTTTAGCAGGCCAACCTGAG                         GTAAC-ACTCAGGGTTGCTCTTGTTCTTCTAGCATCATCTGCTGTTCTTCT
genomic: ATCTCTCTCTTCTTAAAATACGCACAATCTTTTTAGCAGGCCAACCTGAGgtatgatgaa ... catatgacagGTAACGACTCA-GGTTGCTCTTGTTCTTCTAGCATCATCTGCTGTTCTTCT
EST: gi|84117141|gb|CD150908.1|CD150908
EST:     ATCTCTCTCTTCTTAAAATACGCACAATCTTTTTAGCAGGCCAACCTGAG                         GTAACGACTCAGGTTGCTCTTGTTCTTCTAGCATCATCTGCTGTTCTTCTT
genomic: ATCTCTCTCTTCTTAAAATACGCACAATCTTTTTAGCAGGCCAACCTGAGgtatgatgaa ... catatgacagGTAACGACTCAGGTTGCTCTTGTTCTTCTAGCATCATCTGCTGTTCTTCTT
EST: gi|29632640|gb|CB637649.1|CB637649
EST:     ATCTCTCTCTTCTTAAAATACGCACAATCTTTTTAGCAGGCCAACCTGAG                         GTAACGACTCAGGTTGCTCTTGTTCTTCTAGCATCATCTGCTGTTCTTCTT
genomic: ATCTCTCTCTTCTTAAAATACGCACAATCTTTTTAGCAGGCCAACCTGAGgtatgatgaa ... catatgacagGTAACGACTCAGGTTGCTCTTGTTCTTCTAGCATCATCTGCTGTTCTTCTT
EST: gi|29628912|gb|CB633923.1|CB633923
EST:     ATCTCTCTCTTCTTAAAATACGCACAATCTTTTTAGCAGGCCAACCTGAG                         GTAACGACTCAGGTTGCTCTTGTTCTTCTAGCATCATCTGCTGTTCTTCTT
genomic: ATCTCTCTCTTCTTAAAATACGCACAATCTTTTTAGCAGGCCAACCTGAGgtatgatgaa ... catatgacagGTAACGACTCAGGTTGCTCTTGTTCTTCTAGCATCATCTGCTGTTCTTCTT
EST: gi|86869317|gb|CI339041.1|CI339041
EST:     ATCTCTCTCTTCTTAAAATACGCACAATCTTTTTAGCAGGCCAACCTGAG                         GTAACGACTCAGGTTGCTCTTGTTCTTCTAGCATCATCTGCTGTTCTTCTT
genomic: ATCTCTCTCTTCTTAAAATACGCACAATCTTTTTAGCAGGCCAACCTGAGgtatgatgaa ... catatgacagGTAACGACTCAGGTTGCTCTTGTTCTTCTAGCATCATCTGCTGTTCTTCTT
EST: gi|88906776|gb|CI375848.1|CI375848
EST:     ATCTCTCTCTTCTTAAAATACGCACAATCTTTTTAGCAGGCCAACCTGAG                         GTAACGACTCAGGTTGCTCTTGTTCTTCTAGCATCATCTGCTGGTCTTCTT
genomic: ATCTCTCTCTTCTTAAAATACGCACAATCTTTTTAGCAGGCCAACCTGAGgtatgatgaa ... catatgacagGTAACGACTCAGGTTGCTCTTGTTCTTCTAGCATCATCTGCTGTTCTTCTT
EST: gi|29678281|gb|CB674556.1|CB674556
EST:     ATCTCTCTCTTCTTAAAATACGCACAATCTTTTTAGCAGGCCAACCTGAG                         GTAACGACTCAGGTTGCTCTTGTTCTTCTAGCATCATCTGCTGTTCTTCTT
genomic: ATCTCTCTCTTCTTAAAATACGCACAATCTTTTTAGCAGGCCAACCTGAGgtatgatgaa ... catatgacagGTAACGACTCAGGTTGCTCTTGTTCTTCTAGCATCATCTGCTGTTCTTCTT
EST: gi|88969924|gb|CI383426.1|CI383426
EST:     ATCTCTCTCTTCTTAAAATACGCACAATCTTTTTAGCAGGCCAACCTGAG                         GTAACGACTCAGGTTGCTCTTGTTCTTCTAGCATCATCTGCTGTTCTTCTT
genomic: ATCTCTCTCTTCTTAAAATACGCACAATCTTTTTAGCAGGCCAACCTGAGgtatgatgaa ... catatgacagGTAACGACTCAGGTTGCTCTTGTTCTTCTAGCATCATCTGCTGTTCTTCTT
EST: gi|86872104|gb|CI333265.1|CI333265
EST:     AATCTTTTTAGGCAGGCCAACCTGAG                         GTAAGGACTCAGGTTGCTCTTGTTCTTCTAGCATCATCTGCTGTTCTTCTT
genomic: AATCTTTTTA-GCAGGCCAACCTGAGgtatgatgaa ... catatgacagGTAACGACTCAGGTTGCTCTTGTTCTTCTAGCATCATCTGCTGTTCTTCTT
EST: gi|8856618|gb|AU093936.1|AU093936
EST:     ATCTCTCTCTTCTTAAAATACGCNCAATCTTTTTAGCAGGCCAACCTGAG                         GTAACGACTCAGGTTGCTCTTGTTCTTCTAGCATCATCTGCTGTTCTTCTT
genomic: ATCTCTCTCTTCTTAAAATACGCACAATCTTTTTAGCAGGCCAACCTGAGgtatgatgaa ... catatgacagGTAACGACTCAGGTTGCTCTTGTTCTTCTAGCATCATCTGCTGTTCTTCTT