1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GCGCTCCGACGTCTTCCACCTCCTCACCGGCACGTGGGCTACCCCCGCCGAGCGCTGCTTCCTCTGGATGGGCGGCTTCCGCCCCTCCGACCTTCTCAAGgttcgcctccgccgccgccgccgcctgcatcgccggcgttgcctgcatgggcgtgtcacgaatatatactcatcgtcgactatatatgcag
species | Oryza sativa |
transcript | LOC_Os01g64020.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AGCGCTGCTTCCTCTGGATGGGCGGCTTCCGCCCCTCCGACCTTCTCAAG ATACTGATACAGCAGCTGGACCCGCTGACGGAGCAGCAGATGCTGGGGATCEST: gi|86498977|gb|CI141610.1|CI141610
genomic: AGCGCTGCTTCCTCTGGATGGGCGGCTTCCGCCCCTCCGACCTTCTCAAGgttcgcctcc ... atatatgcagATACTGATACAGCAGCTGGACCCGCTGACGGAGCAGCAGATGCTGGGGATC
EST: AGCGCTGCTTCCTCTGGATGGGCGGCTTCCGCCCCTCCGACCTTCTCAAG ATACTGATACAGCAGCTGGACCCGCTGACGGAGCAGCAGATGCTGGGGATCEST: gi|87010099|gb|CI279196.1|CI279196
genomic: AGCGCTGCTTCCTCTGGATGGGCGGCTTCCGCCCCTCCGACCTTCTCAAGgttcgcctcc ... atatatgcagATACTGATACAGCAGCTGGACCCGCTGACGGAGCAGCAGATGCTGGGGATC
EST: AGCGCTGCTTCCTCTGGATGGGCGGCTTCCGCCCCTCCGACCTTCTCAAG ATACTGATACAGCAGCTGGACCCGCTGACGGAGCAGCAGATGCTGGGGATC
genomic: AGCGCTGCTTCCTCTGGATGGGCGGCTTCCGCCCCTCCGACCTTCTCAAGgttcgcctcc ... atatatgcagATACTGATACAGCAGCTGGACCCGCTGACGGAGCAGCAGATGCTGGGGATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGCTCCGACGTCTTCCACCTCCTCACCGGCACGTGGGCTACCCCCGCCGAGCGCTGCTTCCTCTGGATGGGCGGCTTCCGCCCCTCCGACCTTCTCAAGgttcgcctccgccgccgccgccgcctgcatcgccggcgttgcctgcatgggcgtgtcacgaatatatactcatcgtcgactatatatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT