1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GCTCCGTTTCTGCAACCCAGAGTTGAGTGAAATAGTAACAAAATGGCTAAAAACAGATCAGTGGACAAGCAACCTTGATCTTCTTACCGGACTTCGGAAAgtatgtgtgcatccttctaaaccttgcaccatttttccttgctattactcatctgactacttaagtataaccgaaagcgttacag
species | Oryza sativa |
transcript | LOC_Os01g63270.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AAACAGATCAGTGGACAAGCAACCTTGATCTTCTTACCGGACTTCGGAAA TTTGCAGATGATGAAAAGCTTCATGCTGAGTGGGCATCAACTAAGTTGGCTEST: gi|58610009|gb|CK038042.1|CK038042
genomic: AAACAGATCAGTGGACAAGCAACCTTGATCTTCTTACCGGACTTCGGAAAgtatgtgtgc ... agcgttacagTTTGCAGATGATGAAAAGCTTCATGCTGAGTGGGCATCAGCTAAGTTGGCT
EST: AAACAGATCAGTGGACAAGCAACCTTGATCTTCTTACCGGACTTCGGAAA TTTGCAGATGATGAAAAGCTTCATGCTGAGTGGGCATCAGCTAAGTTGGCTEST: gi|699986|gb|D46277.1|D46277
genomic: AAACAGATCAGTGGACAAGCAACCTTGATCTTCTTACCGGACTTCGGAAAgtatgtgtgc ... agcgttacagTTTGCAGATGATGAAAAGCTTCATGCTGAGTGGGCATCAGCTAAGTTGGCT
EST: AAACAGATCAGTGGACAAGCAACCTTGATCTTCTTACCGGACTTCGGAAA TTTGCAGATGATGAAAAGCTTCATGCTGAGTGGGCATCAGCTAAGTTGGCTEST: gi|29623647|gb|CB628658.1|CB628658
genomic: AAACAGATCAGTGGACAAGCAACCTTGATCTTCTTACCGGACTTCGGAAAgtatgtgtgc ... agcgttacagTTTGCAGATGATGAAAAGCTTCATGCTGAGTGGGCATCAGCTAAGTTGGCT
EST: AAACAGATCAGTGGACAAGCAACCTTGATCTTCTTACCGGACTTCGGAAA TTTGCAGATGATGAAAAGCTTCATGCTGAGTGGGCATCAGCTAAGTTGGCTEST: gi|58657279|gb|CK045959.1|CK045959
genomic: AAACAGATCAGTGGACAAGCAACCTTGATCTTCTTACCGGACTTCGGAAAgtatgtgtgc ... agcgttacagTTTGCAGATGATGAAAAGCTTCATGCTGAGTGGGCATCAGCTAAGTTGGCT
EST: AAACAGATCAGTGGACAAGCAACCTTGATCTTCTTACCGGACTTCGGAAA TTTGCAGATGATGAAAAGCTTCATGCT
genomic: AAACAGATCAGTGGACAAGCAACCTTGATCTTCTTACCGGACTTCGGAAAgtatgtgtgc ... agcgttacagTTTGCAGATGATGAAAAGCTTCATGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTCCGTTTCTGCAACCCAGAGTTGAGTGAAATAGTAACAAAATGGCTAAAAACAGATCAGTGGACAAGCAACCTTGATCTTCTTACCGGACTTCGGAAAgtatgtgtgcatccttctaaaccttgcaccatttttccttgctattactcatctgactacttaagtataaccgaaagcgttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA