1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GACATCGTGCCATCTCAGCCTGCAAAATCAACAAATCCATTTGACATGGCATTTGAGTCTGATGTTGAAGCCAGTAACATGgtgtgtattaattatactatgatgtggtttgtggtcatgataattataatatggattctagcttttttttaatggatataatcatattttaagacatttg...
species | Oryza sativa |
transcript | LOC_Os01g59850.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CAAATCCATTTGACATGGCATTTGAGTCTGATGTTGAAGCCAGTAACATG TTCATGGATCTGEST: gi|29628793|gb|CB633804.1|CB633804
genomic: CAAATCCATTTGACATGGCATTTGAGTCTGATGTTGAAGCCAGTAACATGgtgtgtatta ... tccttttcagTTCATGGATCTG
EST: CAAATCCATTTGACATGGCATTTGAGTCTGATGTTGAAGCCAGTAACATG TTCATGGATCTGACCTCGCTGCAAGAAATGTTGCCAAATCCCCATGTCAATEST: gi|32947805|gb|BP184377.1|BP184377
genomic: CAAATCCATTTGACATGGCATTTGAGTCTGATGTTGAAGCCAGTAACATGgtgtgtatta ... tccttttcagTTCATGGATCTGACCTCGCTGCAAGAAACGTTGCCAAATCCCCATGTCAAT
EST: CAAATCCATTTGACATGGCATTTGAGTCTGATGTTGAAGCCAGTAACATG TTCATGGATCTGACCTCGCTGCAAGAAACGTTGCCAAATCCCCATGTCAATEST: gi|218480196|gb|FG949563.1|FG949563
genomic: CAAATCCATTTGACATGGCATTTGAGTCTGATGTTGAAGCCAGTAACATGgtgtgtatta ... tccttttcagTTCATGGATCTGACCTCGCTGCAAGAAACGTTGCCAAATCCCCATGTCAAT
EST: CAAATCCATTTGACATGGCATTTGAGTCTGATGTTGAAGCCAGTAACATG TTCATGGATCTGACCTCGCTGCAAGAAATGTTGCCAAATCCCCATGTCAATEST: gi|29671473|gb|CB667748.1|CB667748
genomic: CAAATCCATTTGACATGGCATTTGAGTCTGATGTTGAAGCCAGTAACATGgtgtgtatta ... tccttttcagTTCATGGATCTGACCTCGCTGCAAGAAACGTTGCCAAATCCCCATGTCAAT
EST: CAAATCCATTTGACATGGCATTTGAGTCTGATGTTGAAGCCAGTAACATG TTCATGGATCTGACCTCGCTGCAAGAAACGTTGCCAAATCCCCATGTCAATEST: gi|12623253|gb|AU173466.1|AU173466
genomic: CAAATCCATTTGACATGGCATTTGAGTCTGATGTTGAAGCCAGTAACATGgtgtgtatta ... tccttttcagTTCATGGATCTGACCTCGCTGCAAGAAACGTTGCCAAATCCCCATGTCAAT
EST: CAAATCCATTTGACATGGCATTTGAGTCTGATGTTGAAGCCAGTAACATG TTCATGGATCTGACCTCGCTGCAAGAAACGTTGCCAAATCCCCATGTCAATEST: gi|86874259|gb|CI335871.1|CI335871
genomic: CAAATCCATTTGACATGGCATTTGAGTCTGATGTTGAAGCCAGTAACATGgtgtgtatta ... tccttttcagTTCATGGATCTGACCTCGCTGCAAGAAACGTTGCCAAATCCCCATGTCAAT
EST: AAATCCATTTGACATGGCATTTGAGTCTGATGTTGAAGCCAGTAACATG TTCATGGATCTGACCTCGGTGCAAGAAACGTTGCCAAATCCCCATGTCAATEST: gi|29669999|gb|CB666274.1|CB666274
genomic: AAATCCATTTGACATGGCATTTGAGTCTGATGTTGAAGCCAGTAACATGgtgtgtatta ... tccttttcagTTCATGGATCTGACCTCGCTGCAAGAAACGTTGCCAAATCCCCATGTCAAT
EST: CAAATCCATTTGACATGGCATTTGAGTCTGATGTTGAAGCCAGTAACATG TTCATGGATCTGACCTCGCTGCAAGAAACGTTGCCAAATCCCCATGTCAATEST: gi|29624490|gb|CB629501.1|CB629501
genomic: CAAATCCATTTGACATGGCATTTGAGTCTGATGTTGAAGCCAGTAACATGgtgtgtatta ... tccttttcagTTCATGGATCTGACCTCGCTGCAAGAAACGTTGCCAAATCCCCATGTCAAT
EST: CAAATCCATTTGACATGGCATTTGAGTCTGATGTTGAAGCCAGTAACATG TTCATGGATCTGACCTCGCTGCAAGAAATGTTGCCAAATCCCCATGTCAAT
genomic: CAAATCCATTTGACATGGCATTTGAGTCTGATGTTGAAGCCAGTAACATGgtgtgtatta ... tccttttcagTTCATGGATCTGACCTCGCTGCAAGAAACGTTGCCAAATCCCCATGTCAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACATCGTGCCATCTCAGCCTGCAAAATCAACAAATCCATTTGACATGGCATTTGAGTCTGATGTTGAAGCCAGTAACATGgtgtgtattaattatactatgatgtggtttgtggtcatgataattataatatggattctagcttttttttaatggatataatcatattttaagacatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC