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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTTATGGAGTACATGATGAAGCTAAGGACAAAGCTTTTGAGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgttgttatttaaaaataaataaactctgtccatatttttgtgaactttgctcacttggcatactgcatacag

Basic information

species Oryza sativa
transcript LOC_Os01g59600.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g59600.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G445100_T01 (Zea mays), 5'ss of exon 10
CATTTATGGAGTACATGATGAAGCTAAGGACAAAGCTTTTGAGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgttgttatttaaa-aataaataaactctgtccatatttttgt--gaa---------------ctttgctcacttggcatactgcatacag-----
 ||||||| ||| ||||||||||||||||||||||||||||||||||| || |||||||| ||||| ||||| || |||||||||||||||||  | ||  | |||| | |  |  |||   ||||||   | | |   |  |||               |||||||||| || ||||| |    ||      
AATTTATGCAGTGCATGATGAAGCTAAGGACAAAGCTTTTGAGTTGGAGTTGAGCTGGATCTGTGAGGAATCGAAGCGCCAGCATCAGAAGgtactatg--gatattcacatgaagaatggcctctgtatgtttctccatttgaatttaaagctgaactcctttgctcacctgtcatacaggtcccaaatgac

upper sequence: LOC_Os01g59600.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G008623_T01 (Zea mays), 5'ss of exon 10
CATTTATGGAGTACATGATGAAGCTAAGGACAAAGCTTTTGAGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgttgttat--ttaaaaataaataaactctg-----tccatattttt--------gtgaactttg---ctcacttggcatactg--catacag
 ||||||||||| ||||| ||||| ||||| |||||||| |||||||| || |||||||| || |||||||| || | |||||||||||||||  |  | | ||    | || ||| |||   |||||     |||    |||         |||||  ||    ||   || || | ||   ||| |||
AATTTATGGAGTGCATGACGAAGCGAAGGATAAAGCTTTCGAGTTGGAGTTGAGCTGGATCTGCGATGAATCGAACCACCAGCATCAGAAGgtactgggatattcgcatgaataatgaattgtctctgcatggtcctcgatttgaatctgaggtgaaacttaaatctttttttgcttgcttgccatgcag

upper sequence: LOC_Os01g59600.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G130398_T03 (Zea mays), 5'ss of exon 10
CATTTATGGAGTACATGATGAAGCTAAGGACAAAGCTTTTGAGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgttgttattt--aaaaataaataaactctgtccatatttt--tgtgaactttgctca-----cttggcatactgcatacag------
 ||||||||||| ||||| ||||| ||||||||||||||||||||||| || |||||||| ||||||||||| || |||||||||||||||||  |  | | ||       | ||| | |   ||||||     | |   ||| || ||    ||     |||    |  ||| |||        
AATTTATGGAGTGCATGACGAAGCGAAGGACAAAGCTTTTGAGTTGGAGTTGAGCTGGATCTGTGATGAATCGAACCGCCAGCATCAGAAGgtactgggatattcacgcggagaatgagttgtctctgtatggttctcgatgtaaatttgaagcagaaaacttttttttttgcgtacttgtacag

upper sequence: LOC_Os01g59600.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G028346_T01 (Zea mays), 5'ss of exon 8
CATTTATGGAGTACATGATGAAGCTAAGGACAAAGCTTTTGAGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctg----ttgttatttaaa-aataaataaactctgtccatatttt--tgtgaactttg--------ctcacttggcatactg-catacag
 ||||||||||| ||||| ||| | ||||||||||||||||||||||| || |||||||| ||||||||||| || |||||||||||||||||    ||      | |||| |    |  |||   |||| |   | | |   | |||| ||          ||   ||||    ||| |||||||
AATTTATGGAGTGCATGACGAATCCAAGGACAAAGCTTTTGAGTTGGAGTTGAGCTGGATCTGTGATGAATCGAACCGCCAGCATCAGAAGgtaccgtgggaccagatattcaggcgaagaatggcctctctatgtttctcgatttgaatttaaagctgaaacttctttggtcacctgtcatacag

upper sequence: LOC_Os01g59600.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G445100_T02 (Zea mays), 5'ss of exon 10
CATTTATGGAGTACATGATGAAGCTAAGGACAAAGCTTTTGAGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgttgttatttaaa-aataaataaactctgtccatatttttgt---------gaactttgctcacttggcatactg-catacag
 ||||||| ||| ||||||||||||||||||||||||||||||||||| || |||||||| ||||| ||||| || |||||||||||||||||  | ||  | |||| | |  |  |||   ||||||   | | |   |          | ||   |||  |||     ||| |||||||
AATTTATGCAGTGCATGATGAAGCTAAGGACAAAGCTTTTGAGTTGGAGTTGAGCTGGATCTGTGAGGAATCGAAGCGCCAGCATCAGAAGgtactatg--gatattcacatgaagaatggcctctgtatgtttctccatttgaatttaaagctgaactcctttgctcacctgtcatacag

upper sequence: LOC_Os01g59600.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GLYMA19G17920.1 (Glycine max), 5'ss of exon 9
CATTTATGGAGTACATGATGAAGCTAAGGACAAAGCTTTTGAGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgt----------gttctgttg-ttattt--aaaaataaataaactctgtccatatttttgtgaactttgctcacttggcatact-gcatacag-------
 || |||||||| ||||| || || |||||||||| ||| || || ||| | |||||| | |||||||||||||| ||||| ||| |||||||          || || | | ||| ||  | |  || | ||  | | ||  |    || |||   |     |  ||    | | |     ||       
TATATATGGAGTTCATGACGAGGCCAAGGACAAAGATTTCGAATTAGAAATGAGCTGGGTGTGTGATGAATCAAACCGCCAACATGAGAAGgtaaggctgggtgtactttcggttacttctacatgtagacaatttgtttcagttaccttatgacaatgatcaatgtgcttcatttgtgattagttgtaat

upper sequence: LOC_Os01g59600.1 (Oryza sativa), 5'ss of exon 10
lower sequence: AT2G27020.1 (Arabidopsis thaliana), 5'ss of exon 9
CATTTATGGAGTACATGATGAAGCTAAGGACAAAGCTTTTGAGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtg---ttctgttgttatttaaaaataaataa-actctgtccatatttttgtgaactttgctcacttggcatactgcatacag
||| ||     |||| |||||||| |||||||| |||||||| |||||  | ||||||||||| || || ||||| ||  |||||||||||||    || | |   |  ||    || ||  |   | |    | || ||  | |||  |    |  | | |  |  | || ||
CATCTACAAGCTACACGATGAAGCCAAGGACAAGGCTTTTGAATTGGAGATGAGCTGGATATGCGAGGAGTCAAAACGAGAGCATCAGAAGgtaaaattttataagtgcttgcttatgaaggatgatttaaggagatattcataaaccatatataaattggactcgtcgtatag

upper sequence: LOC_Os01g59600.1 (Oryza sativa), 5'ss of exon 10
lower sequence: Vv08s0040g00410.t01 (Vitis vinifera), 5'ss of exon 9
CATTTATGGAGTACATGATGAAGCTAAGGACAAAGCTTTTGAGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgttg---ttattta----aaaataaataaactctgtccatatttttgtgaactttgctcacttggcatactgcatacag--------------
||||||||| ||||| ||||| || |||||||| || |||||||||||| | |||||| | ||||| || ||||| |||||||||||||||||  ||| |||   ||||  |    || | | || ||||     ||||| ||   ||  | | | |  |||        ||| |                
CATTTATGGGGTACACGATGAGGCCAAGGACAAGGCATTTGAGTTGGAAATGAGCTGGGTTTGTGAGGAGTCAAACCGCCAGCATCAGAAGgtaatctcttgaatttatcaagatcaagaaacattaacttaactcatatcttgaagacatctaccctgttgattgcacccatgctcactagctggatagc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86889028|gb|CI314644.1|CI314644
EST:     AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG                         GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: gi|88847361|gb|CI011304.1|CI011304
EST:     AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG                         GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: gi|88976521|gb|CI024666.1|CI024666
EST:     AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG                         GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: gi|12622989|gb|AU173202.1|AU173202
EST:     AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG                         GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: gi|86835538|gb|CI347995.1|CI347995
EST:     AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG                         GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: gi|163928912|gb|EG711949.1|EG711949
EST:     AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG                         GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: gi|88381429|gb|CI528409.1|CI528409
EST:     AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG                         GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: gi|86597380|gb|CI280517.1|CI280517
EST:     AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG                         GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: gi|33686422|gb|CF314661.1|CF314661
EST:     AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG                         GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: gi|88273185|gb|CI388641.1|CI388641
EST:     AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG                         GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: gi|86841716|gb|CI337401.1|CI337401
EST:     AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG                         GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: gi|88270098|gb|CI381396.1|CI381396
EST:     AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG                         GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: gi|29668732|gb|CB665007.1|CB665007
EST:     AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG                         GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: gi|86547135|gb|CI187341.1|CI187341
EST:     AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG                         GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: gi|88290894|gb|CI544991.1|CI544991
EST:     AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG                         GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: gi|88255608|gb|CI354432.1|CI354432
EST:     AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG                         GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: gi|86836032|gb|CI346125.1|CI346125
EST:     AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG                         GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: gi|163920473|gb|EG709578.1|EG709578
EST:     AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG                         GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: gi|8859855|gb|AU097173.1|AU097173
EST:     AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG                         GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: gi|86865028|gb|CI344565.1|CI344565
EST:     AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG                         GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: gi|8856768|gb|AU094086.1|AU094086
EST:     AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG                         GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: gi|33686717|gb|CF314956.1|CF314956
EST:     AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG                         GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: gi|88428139|gb|CI557033.1|CI557033
EST:     AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG                         GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: gi|86503973|gb|CI146606.1|CI146606
EST:     AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG                         GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: gi|88849220|gb|CI087742.1|CI087742
EST:     AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG                         GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: gi|88376281|gb|CI533183.1|CI533183
EST:     AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG                         GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: gi|88463261|gb|CI524571.1|CI524571
EST:     TGGATATGTGATGAATCAAGTGGCCAGCATCAGAAG                         GTTCCTGCTGATCTTTT-GAGGCAGGCCAAGGTTGCAGCTCAGGCAGCGCT
genomic: TGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGA-GCAGGCCAAGGTTGCAGCTCAGGCAGCGCT
EST: gi|88255078|gb|CI353902.1|CI353902
EST:     AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG                         GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: gi|86543850|gb|CI184056.1|CI184056
EST:     AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG                         GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: gi|88484005|gb|CI421276.1|CI421276
EST:     AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG                         GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: gi|33692106|gb|CF320345.1|CF320345
EST:     AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG                         GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: gi|3761113|gb|C98361.1|C98361
EST:     AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG                         GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: gi|89193487|gb|CI050785.1|CI050785
EST:     AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG                         GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: gi|88465462|gb|CI520014.1|CI520014
EST:     AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG                         GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: gi|38480564|gb|CF964653.1|CF964653
EST:     TGTGATGAATCAAATCGCCAGCATCAGAAG                         GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
genomic: TGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: gi|86890281|gb|CI321458.1|CI321458
EST:     AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG                         GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: gi|88440146|gb|CI546441.1|CI546441
EST:     AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG                         GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: gi|88960050|gb|CI381928.1|CI381928
EST:     AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG                         GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: gi|86529979|gb|CI170185.1|CI170185
EST:     AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG                         GTTCCTGCTGACCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: gi|86545852|gb|CI186058.1|CI186058
EST:     AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG                         GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: gi|88516644|gb|CI444298.1|CI444298
EST:     AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG                         GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: gi|87005762|gb|CI316181.1|CI316181
EST:     AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG                         GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: gi|88250600|gb|CI348830.1|CI348830
EST:     AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG                         GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: gi|86841231|gb|CI342961.1|CI342961
EST:     AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG                         GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTCCAGCTCAGGCAGCGCTT
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: gi|86870489|gb|CI320585.1|CI320585
EST:     AGTTGGAATTAAGCT-GATATGTGATGAATCAAATCGCCAGCATCAGAAG                         GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: gi|88987100|gb|CI034141.1|CI034141
EST:     AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG                         GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
EST: gi|3762962|gb|AU029714.1|AU029714
EST:     AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAG                         GTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT
genomic: AGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 75 (downstream exon)
Score: 79

CATTTATGGAGTACATGATGAAGCTAAGGACAAAGCTTTTGAGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgtt ... ctgcatacagGTTCCTGCTGATCTTTTGGAGCAGGCCAAGGTTGCAGCTCAGGCAGCGCTTGAGGAGATGGATGCTGATTAAGAGGAGACCCGACTATGTTCTACGTTTG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CATTTATGGAGTACATGATGAAGCTAAGGACAAAGCTTTTGAGTTGGAATTAAGCTGGATATGTGATGAATCAAATCGCCAGCATCAGAAGgtgttctgttgttatttaaaaataaataaactctgtccatatttttgtgaactttgctcacttggcatactgcatacag

- - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA