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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAGAGAGTCATTGGTGAACCTGTGGTTTCTGGGCTAGTACTTGATGATTCTTGGCTTTGGGATCCGGACTTCATGATAGCTTCAAAgtaaataaaagcacaaatttaatgctttgtttatgcaattgtggtttcttttatctcatatcacatttctag

Basic information

species Oryza sativa
transcript LOC_Os01g59340.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g59340.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G020002_T03 (Zea mays), 5'ss of exon 7
GGCAGAGAGTCATTGGTGAACCTGTGGTTTCTGGGCTAGTACTTGATGATTCTTGGCTTTGGGATCCGGACTTCATGATAGCTTCAAAgtaaataaaagcacaaatttaatgctttgtttatgcaattgtggtttcttt-tatctcatatcacatttctag
||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||| ||| ||||||||||||||   |  |||| |     |   || || |  |||| |   || ||| ||| ||| |  |   ||||||
GGCAGAGAGTCATCGGTGAACCTGTGGTTTCTGGACTAGTGCTTGATGATTCTTGGCTTTGGGATCCTGACTTCACGATTGCTTCAAAgtaaatgggaaaacaactcagtagtaatgcttttcgaattataaattatttctatttcacacgatgcttctag

upper sequence: LOC_Os01g59340.1 (Oryza sativa), 5'ss of exon 10
lower sequence: Vv06s0009g02790.t01 (Vitis vinifera), 5'ss of exon 7
GGCAGAGAGTCATTGGTGAACCTGTGGTTTCTGGGCTAGTACTTGATGATTCTTGGCTTTGGGATCCGGACTTCATGATAGCTTCAAAgtaaataaaagcacaaatttaatg--ctttgtttatgcaattgtggtt---tcttttatctcatatcacatttctag----------------
| ||||| || ||||| || || || ||||||||| |||| |||||||||||| |||| |||||||| |||||||| |  ||  ||||| ||        ||   ||  ||   |||  | | | || ||    |    | ||||| |   | |||   || |                  
GACAGAGGGTTATTGGAGAGCCAGTAGTTTCTGGGTTAGTCCTTGATGATTCTGGGCTCTGGGATCCTGACTTCATCAACGCAGCAAAgcaagatctcatactccttccattttcttcttctcttcactttctatcacattttttaacctttgtcaacattatgatcttttcatgtttcag