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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGCTTACAAGGCTGCCATGCATTATCTCCATCATGATCCCTGgtaaaaatatcctgttaatgcagtgttgaatgaattacaggtgacctgtgattgtttgaggatatttagctagtactcagtgaataaactaatggattaa...

Basic information

species Oryza sativa
transcript LOC_Os01g56670.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g56670.3 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G173868_T02 (Zea mays), 5'ss of exon 10
---------------------------------------------GAGGCTTACAAGGCTGCCATGCATTATCTCCATCATGATCCCTGgtaaaaatatcctgttaatgcagtgttgaatgaattacaggt----gacctgtgattgtttgagg-atattta--gctagtactcagtgaataaactaatggattaa
                                             ||||||||||| ||||||||||| ||||||||||||||||| ||||||  ||      |       ||      ||  ||| |||      | |||  | |||| ||   | |||||  | || |    |    ||| | | ||       
GCATATTTATTGTTTGGAGATGAAGAATACCTGTACATTTTTCAGGAGGCTTACAAAGCTGCCATGCACTATCTCCATCATGATCCTTGgtaacgatcctaattcctattcgttacagttgggttataggatataaatctggtactgttggattcacatttaaagttactttatatgatatacatttat-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88361880|gb|CI682051.1|CI682051
EST:     GAGGCTTACAAGGCTGCCATGCATTATCTCCATCATGATCCCTG                         GTATGTGGAGGTAAATATGAATTCTGGTGCTACTGTNTGGCCACTATCCAA
genomic: GAGGCTTACAAGGCTGCCATGCATTATCTCCATCATGATCCCTGgtaaaaatat ... ttaattccagGTATGTGGAGGTAAATATGAATTCTGGTGCTACTGTTTGGCCACTATTCAA
EST: gi|88394177|gb|CI684850.1|CI684850
EST:     GAGGCTTACAAGGCTGCCATGCATTATCTCCATCATGATCCCTG                         GTATGTGGAGGTAAATATGAATTCTGGTGCTACTGTTTGGCCACTATTCAA
genomic: GAGGCTTACAAGGCTGCCATGCATTATCTCCATCATGATCCCTGgtaaaaatat ... ttaattccagGTATGTGGAGGTAAATATGAATTCTGGTGCTACTGTTTGGCCACTATTCAA