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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGTATTTATTATTTGGAGATGAAGAATATTTGTATATATTTCAGGAGGCTTACAAGGCTGCCATGCATTATCTCCATCATGATCCCTGgtaaaaatatcctgttaatgcagtgttgaatgaattacaggtgacctgtgattgtttgaggatatttagctagtactcagtgaataaactaatggattaa...

Basic information

species Oryza sativa
transcript LOC_Os01g56670.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g56670.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G173868_T02 (Zea mays), 5'ss of exon 10
GCGTATTTATTATTTGGAGATGAAGAATATTTGTATATATTTCAGGAGGCTTACAAGGCTGCCATGCATTATCTCCATCATGATCCCTGgtaaaaatatcctgttaatgcagtgttgaatgaattacaggt----gacctgtgattgtttgagg-atattta--gctagtactcagtgaataaactaatggattaa
|| |||||||| |||||||||||||||||  |||| || ||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||  ||      |       ||      ||  ||| |||      | |||  | |||| ||   | |||||  | || |    |    ||| | | ||       
GCATATTTATTGTTTGGAGATGAAGAATACCTGTACATTTTTCAGGAGGCTTACAAAGCTGCCATGCACTATCTCCATCATGATCCTTGgtaacgatcctaattcctattcgttacagttgggttataggatataaatctggtactgttggattcacatttaaagttactttatatgatatacatttat-------

upper sequence: LOC_Os01g56670.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GLYMA10G32320.1 (Glycine max), 5'ss of exon 9
GCGTATTTATTATTTGGAGATGAAGAATATTTGTATATATTTCAGGAGGCTTACAAGGCTGCCATGCATTATCTCCATCATGATCCCTGgtaaaaatatcc-----tgttaatgcagtgttga-atgaattacaggtgacctgtgattgtttgaggatatttagctag--tactcagtgaataaactaatggattaa----------------------------
|| |||||||||||||||||||| || || ||||||||||| || || |||||    |||||||||||||||||  | ||||| || ||||||||   |       ||||    |  |||  | ||   | ||  |    || |  || |||||  || | ||  ||   |  |   | |||  | |    | || |                            
GCTTATTTATTATTTGGAGATGAGGAGTACTTGTATATATTCCAAGAAGCTTATGCTGCTGCCATGCATTATCTTTACCATGACCCTTGgtaaaagcttgtggctatgttgccaccctgtaaatatacttgactcgctgtctatcgttttttgaa-atgtgtaagtatgtttatttttaaatgtatttcaagtttgaaactcttgatttgtgtttatgtttcaag

upper sequence: LOC_Os01g56670.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GLYMA20G35290.1 (Glycine max), 5'ss of exon 4
GCGTATTTATTATTTGGAGATGAAGAATATTTGTATATATTTCAGGAGGCTTACAAGGCTGCCATGCATTATCTCCATCATGATCCCTGgtaaaaatatcctgtta---atgcagtgttg--aatgaatt--acaggtgacctgtgattgtttgaggatatttagctagtac-tcagtgaataaactaatggattaa---------------------------
|||||||||||||||||||||||  | ||||| |||||||| || || |||||    |||||||||||||||||  | ||||| || ||||||||   |   | ||    |||     ||   ||  | |  ||       || |  || |||||     || ||   ||   |   | |||  | |    | || |                           
GCGTATTTATTATTTGGAGATGAGCAGTATTTATATATATTCCAAGAAGCTTATGCTGCTGCCATGCATTATCTTTACCATGACCCTTGgtaaaagcttgtggctatgcgtgccactctgtagatatacttgacttactgtctattgttttttgaaatgcttaagtatgtttatttttaaatgtatttcaagtttgaaactcggatttgtgtttatgcttcaag