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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAATTGGTATCCTTCTTGATGGGCTATTTGGAACGGGTACTGGCTCCACCGTGTCAGTgtgagtgaacttcagaatttttttttatcaaagagttacttccagcttgataacgttaagatcaatgcag

Basic information

species Oryza sativa
transcript LOC_Os01g55500.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g55500.1 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G437859_T04 (Zea mays), 5'ss of exon 10
GGAATTGGTATCCTTCTTGATGGGCTATTTGGAACGGGTACTGGCTCCACCGTGTCAGTgtgagtgaact---tcagaatttttttttatcaaagagtt-acttccagcttgataacgttaagatcaatgcag--------------------------------------------------
||||| || ||||| ||||| ||||| ||||||||||| ||||||||||| || ||||||||||||   |    || ||       ||   | | | || ||| |  |  ||   | ||     | |   ||                                                   
GGAATCGGCATCCTCCTTGACGGGCTCTTTGGAACGGGGACTGGCTCCACTGTCTCAGTgtgagtgtcttatgccaaaaccaagccttgatacatactttactactcggctgcagatgt-gtttttatcacaagccttttgatgctagttccttggctggccaaaaaaaaaaaaaaattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58669485|gb|CK058171.1|CK058171
EST:     ATCCTTCTTGATGGGCTATTTGGAACGGGTACTGGCTCCACCGTGTCAGT                         GGAGAATGTCGGGTTGTTAGGATCAACGAGGATCGGGAGCCGACGAGTTAT
genomic: ATCCTTCTTGATGGGCTATTTGGAACGGGTACTGGCTCCACCGTGTCAGTgtgagtgaac ... atcaatgcagGGAGAATGTCGGGTTGTTAGGATCAACGAGGATCGGGAGCCGACGAGTTAT
EST: gi|33793472|gb|CF322619.1|CF322619
EST:     ATCCTTCTTGATGGGCTATTTGGAACGGGTACTGGCTCCACCGTGTCAGT                         GGAGAATGTCGGGTTGTTAGGATCAACGAGGATCGGGAGCCGACGAGTTAT
genomic: ATCCTTCTTGATGGGCTATTTGGAACGGGTACTGGCTCCACCGTGTCAGTgtgagtgaac ... atcaatgcagGGAGAATGTCGGGTTGTTAGGATCAACGAGGATCGGGAGCCGACGAGTTAT