1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATGCTGGAGTGAAAATCCTGCTAGCAGGCCTGACTTTAGAACGATCATTGAACAATTGTCTTATATCCAGAATGAAATATCTCAGAGAAACCGTTGGAAGgtagcggctaatgtctttcctgctgtattgcaatggtcttctgaacattctgtcatagtaatagagaaattgttcaagtaacagattgatttactttggctgtgcccttgtcttgaacag
species | Oryza sativa |
transcript | LOC_Os01g54480.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AACAATTGTCTTATATCCAGAATGAAATATCTCAGAGAAACCGTTGGAAG GTGAAACCTCTCAAATGCTTCCTGAGCTTTGAGGGCATGTGGAAGAAAGATEST: gi|89162896|gb|CI099786.1|CI099786
genomic: AACAATTGTCTTATATCCAGAATGAAATATCTCAGAGAAACCGTTGGAAGgtagcggcta ... tcttgaacagGTGAAACCTCTCAAATGCTTCCTGAGCTTTGAGGGCATGTGGAAGAAAGAT
EST: AACAATTGTCTTATATCCAGAATGAAATATCTCAGAGAAACCGTTGGAAG GTGAAACCTCTCAAATGCTTCCTGAGCTTTGAGGGCATGTGGAAGAAAGATEST: gi|88284797|gb|CI406243.1|CI406243
genomic: AACAATTGTCTTATATCCAGAATGAAATATCTCAGAGAAACCGTTGGAAGgtagcggcta ... tcttgaacagGTGAAACCTCTCAAATGCTTCCTGAGCTTTGAGGGCATGTGGAAGAAAGAT
EST: AACAATTGTCTTATATCCAGAATGANATATCTCAGAGAAACCGTTGGAAG ATGAAACCTCTCAAATGCTTCCTGAGCTTTGAGGGCATGTGGAAGAAAGATEST: gi|86485898|gb|CI128531.1|CI128531
genomic: AACAATTGTCTTATATCCAGAATGAAATATCTCAGAGAAACCGTTGGAAGgtagcggcta ... tcttgaacagGTGAAACCTCTCAAATGCTTCCTGAGCTTTGAGGGCATGTGGAAGAAAGAT
EST: AACAATTGTCTTATATCCAGAATGAAATATCTCAGAGAAACCGTTGGAAG GTGAAACCTCTCAAATGCTTCCTGAGCTTTGAGGGCATGTGGAAGAAAGATEST: gi|86259845|gb|CI065718.1|CI065718
genomic: AACAATTGTCTTATATCCAGAATGAAATATCTCAGAGAAACCGTTGGAAGgtagcggcta ... tcttgaacagGTGAAACCTCTCAAATGCTTCCTGAGCTTTGAGGGCATGTGGAAGAAAGAT
EST: AACAATTGTCTTATATCCAGAATGAAATATCTCAGAGAAACCGTTGGAAG GTGAAACCTCTCAAATGCTTCCTGAGCTTTGAGGGCATGTGGAAGAAAGATEST: gi|88222953|gb|CI222802.1|CI222802
genomic: AACAATTGTCTTATATCCAGAATGAAATATCTCAGAGAAACCGTTGGAAGgtagcggcta ... tcttgaacagGTGAAACCTCTCAAATGCTTCCTGAGCTTTGAGGGCATGTGGAAGAAAGAT
EST: AACAATTGTCTTATATCCAGAATGAAATATCTCAGAGAAACCGTTGGAAG GTGAAACCTCTCAAATGCTTCCTGAGCTTTGAGGGCATGTGGAAGAAAGATEST: gi|89166396|gb|CI103486.1|CI103486
genomic: AACAATTGTCTTATATCCAGAATGAAATATCTCAGAGAAACCGTTGGAAGgtagcggcta ... tcttgaacagGTGAAACCTCTCAAATGCTTCCTGAGCTTTGAGGGCATGTGGAAGAAAGAT
EST: AACAATTGTCTTATATCCAGAATGAAATATCTCAGAGAAACCGTTGGAAG GTGAAACCTCTCAAATGCTTCCTGAGCTTTGAGGGCATGTGGAAGAAAGATEST: gi|88975291|gb|CI023542.1|CI023542
genomic: AACAATTGTCTTATATCCAGAATGAAATATCTCAGAGAAACCGTTGGAAGgtagcggcta ... tcttgaacagGTGAAACCTCTCAAATGCTTCCTGAGCTTTGAGGGCATGTGGAAGAAAGAT
EST: AACAATTGTCTTATATCCAGAATGAAATATCTCAGAGAAACCGTTGGAAG GTGAAACCTCTCAAATGCTTCCTGAGCTTTGAGGGCATGTGGAAGAAAGATEST: gi|88243573|gb|CI243970.1|CI243970
genomic: AACAATTGTCTTATATCCAGAATGAAATATCTCAGAGAAACCGTTGGAAGgtagcggcta ... tcttgaacagGTGAAACCTCTCAAATGCTTCCTGAGCTTTGAGGGCATGTGGAAGAAAGAT
EST: ATCCAGAATGAAATATCTCAGAGAAACCTTTGGAAG GTGAAACCTCTCAAATGCTTCCTGAGCTTTGAGGGCATGTGGAAGAAAGATEST: gi|38481304|gb|CF965393.1|CF965393
genomic: ATCCAGAATGAAATATCTCAGAGAAACCGTTGGAAGgtagcggcta ... tcttgaacagGTGAAACCTCTCAAATGCTTCCTGAGCTTTGAGGGCATGTGGAAGAAAGAT
EST: CTTATATCCAGAATGAAATATCTCAGAGAAACCGTTGGAAG GTGAAACCTCTCAAATGCTTCCTGAGCTTTGAGGGCATGTGGAAGAAAGATEST: gi|29677658|gb|CB673933.1|CB673933
genomic: CTTATATCCAGAATGAAATATCTCAGAGAAACCGTTGGAAGgtagcggcta ... tcttgaacagGTGAAACCTCTCAAATGCTTCCTGAGCTTTGAGGGCATGTGGAAGAAAGAT
EST: AACAATTGTCTTATATCCAGAATGAAATATCTCAGAGAAACCGTTGGAAG GTGAAACCTCTCAAATGCTTCCTGAGCTTTGAGGGCATGTGGAAGAAAGAT
genomic: AACAATTGTCTTATATCCAGAATGAAATATCTCAGAGAAACCGTTGGAAGgtagcggcta ... tcttgaacagGTGAAACCTCTCAAATGCTTCCTGAGCTTTGAGGGCATGTGGAAGAAAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGCTGGAGTGAAAATCCTGCTAGCAGGCCTGACTTTAGAACGATCATTGAACAATTGTCTTATATCCAGAATGAAATATCTCAGAGAAACCGTTGGAAGgtagcggctaatgtctttcctgctgtattgcaatggtcttctgaacattctgtcatagtaatagagaaattgttcaagtaacagattgatttactttggctgtgcccttgtcttgaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG