1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GCAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAGgtttgtttctcacatagctatgcattcattataacatcctattggcttcctttccgtcctagtttgataatttgctaatgccttgctgttactaaccgtc...
species | Oryza sativa |
transcript | LOC_Os01g48990.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAG GTCATGGATTTTGTTTCGCGCTACCTACCAGCATACCACGCATATTTGCCCEST: gi|88464777|gb|CI512082.1|CI512082
genomic: CAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAGgtttgtttct ... attcttgcagGTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCC
EST: GAAACCAGGAATGTCTGATGAGGAG GTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTNCCCEST: gi|88563944|gb|CI494661.1|CI494661
genomic: GAAACCAGGAATGTCTGATGAGGAGgtttgtttct ... attcttgcagGTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCC
EST: CAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAG GTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCCEST: gi|88437594|gb|CI511495.1|CI511495
genomic: CAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAGgtttgtttct ... attcttgcagGTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCC
EST: AACCAGGAATGTCTGATGAGGAG GTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCCEST: gi|29687191|gb|CB683466.1|CB683466
genomic: AACCAGGAATGTCTGATGAGGAGgtttgtttct ... attcttgcagGTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCC
EST: CAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAG GTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCCEST: gi|89181456|gb|CI112962.1|CI112962
genomic: CAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAGgtttgtttct ... attcttgcagGTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCC
EST: CAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAG GTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCCEST: gi|88224956|gb|CI224872.1|CI224872
genomic: CAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAGgtttgtttct ... attcttgcagGTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCC
EST: CAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAG GTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCCEST: gi|88379134|gb|CI508652.1|CI508652
genomic: CAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAGgtttgtttct ... attcttgcagGTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCC
EST: ATAGCTATGAGAGCANATGGGAAACCAGGAATGTCTNATGAGGAG GTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCCEST: gi|86524944|gb|CI165150.1|CI165150
genomic: ATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAGgtttgtttct ... attcttgcagGTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCC
EST: CAGAGATAGCCATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAG GTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCCEST: gi|88285389|gb|CI507259.1|CI507259
genomic: CAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAGgtttgtttct ... attcttgcagGTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCC
EST: ATGGGAAACCAGGAATGTCTGATGAGGAG GTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCCEST: gi|88254825|gb|CI351453.1|CI351453
genomic: ATGGGAAACCAGGAATGTCTGATGAGGAGgtttgtttct ... attcttgcagGTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCC
EST: CAGAGATAGCTATGAGACCAGATGGGAAACCAGGAATGTCTGATGAGGAG GTCATGGATTTTGTGTCGCCCTACCTACCAGCATACCACGCATATTTGCCCEST: gi|88462332|gb|CI511997.1|CI511997
genomic: CAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAGgtttgtttct ... attcttgcagGTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCC
EST: AATGTCTGATGAGGAG GTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCCEST: gi|88419202|gb|CI511354.1|CI511354
genomic: AATGTCTGATGAGGAGgtttgtttct ... attcttgcagGTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCC
EST: CAGGAATGTCTGATGAGGAG GTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCCEST: gi|88454733|gb|CI511705.1|CI511705
genomic: CAGGAATGTCTGATGAGGAGgtttgtttct ... attcttgcagGTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCC
EST: ATGGGAAACCAGGAATGTCTGATGAGGAG GTCATGGATTTTTTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCCEST: gi|88437587|gb|CI511488.1|CI511488
genomic: ATGGGAAACCAGGAATGTCTGATGAGGAGgtttgtttct ... attcttgcagGTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCC
EST: ACCAGGAATGTCTGATGAGGAG GTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCCEST: gi|86425592|gb|CI070689.1|CI070689
genomic: ACCAGGAATGTCTGATGAGGAGgtttgtttct ... attcttgcagGTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCC
EST: CAGAGANAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAG GTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCCEST: gi|88449163|gb|CI560624.1|CI560624
genomic: CAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAGgtttgtttct ... attcttgcagGTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCC
EST: CAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAG GTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCCEST: gi|88228493|gb|CI227973.1|CI227973
genomic: CAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAGgtttgtttct ... attcttgcagGTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCC
EST: CAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAG GTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCCEST: gi|88285431|gb|CI507301.1|CI507301
genomic: CAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAGgtttgtttct ... attcttgcagGTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCC
EST: ACCAGGAATGTCTGATGAGGAG GTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCCEST: gi|88484705|gb|CI421976.1|CI421976
genomic: ACCAGGAATGTCTGATGAGGAGgtttgtttct ... attcttgcagGTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCC
EST: ATGGGAAACCAGGAATGTCTGATGAGGAG GTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCCEST: gi|86853793|gb|CI329239.1|CI329239
genomic: ATGGGAAACCAGGAATGTCTGATGAGGAGgtttgtttct ... attcttgcagGTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCC
EST: CAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAG GTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCCEST: gi|88318826|gb|CI508422.1|CI508422
genomic: CAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAGgtttgtttct ... attcttgcagGTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCC
EST: CAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAG GTCATGGATTTTNTTTCGCGCTACCTACCAGCATACCACGCATATTTGCCCEST: gi|86872693|gb|CI341903.1|CI341903
genomic: CAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAGgtttgtttct ... attcttgcagGTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCC
EST: CAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAG TTCATGGATTTTGTGTCCCGCTACCTACCAGCATACCACGCATATTTGCCCEST: gi|88565200|gb|CI495917.1|CI495917
genomic: CAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAGgtttgtttct ... attcttgcagGTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCC
EST: CAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAG GTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCCEST: gi|86865914|gb|CI335530.1|CI335530
genomic: CAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAGgtttgtttct ... attcttgcagGTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCC
EST: CAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAG CTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCCEST: gi|88462165|gb|CI511830.1|CI511830
genomic: CAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAGgtttgtttct ... attcttgcagGTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCC
EST: AGATGGGAAACCAGGAATGTCTGATGAGGAG GTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCCEST: gi|88378562|gb|CI506266.1|CI506266
genomic: AGATGGGAAACCAGGAATGTCTGATGAGGAGgtttgtttct ... attcttgcagGTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCC
EST: GGGAAACCAGGAATGTCTGATGAGGAG GTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCCEST: gi|88539149|gb|CI468237.1|CI468237
genomic: GGGAAACCAGGAATGTCTGATGAGGAGgtttgtttct ... attcttgcagGTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCC
EST: CAGANATAGCTATTAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAG TTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTNCCCEST: gi|88462016|gb|CI504514.1|CI504514
genomic: CAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAGgtttgtttct ... attcttgcagGTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCC
EST: GGAAACCAGGAATTTCTGATGAGGAG GTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCCEST: gi|88995282|gb|CI036857.1|CI036857
genomic: GGAAACCAGGAATGTCTGATGAGGAGgtttgtttct ... attcttgcagGTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCC
EST: CAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAG GTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCCEST: gi|29626889|gb|CB631900.1|CB631900
genomic: CAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAGgtttgtttct ... attcttgcagGTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCC
EST: CAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAG GTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCCEST: gi|88564728|gb|CI495445.1|CI495445
genomic: CAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAGgtttgtttct ... attcttgcagGTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCC
EST: AGAGATAGCTATGAGAGGCAGATGGGAAACCAGGAATGTCTGATGAGGAG TTCATGGATTTTGTTTCNCGCTACCTACCAGCATACCACGCATATTTGCCCEST: gi|86496003|gb|CI138636.1|CI138636
genomic: AGAGATAGCTATGAGA-GCAGATGGGAAACCAGGAATGTCTGATGAGGAGgtttgtttct ... attcttgcagGTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCC
EST: CAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAG GTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCCEST: gi|88467773|gb|CI507198.1|CI507198
genomic: CAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAGgtttgtttct ... attcttgcagGTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCC
EST: CAGATGGGAAACCAGGAATGTCTGATGAGGGAG TTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCEST: gi|88549854|gb|CI479780.1|CI479780
genomic: CAGATGGGAAACCAGGAATGTCTGATGA-GGAGgtttgtttct ... attcttgcagGTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCC
EST: CAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAG GTCATGGATTTTNTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCCEST: gi|88437529|gb|CI511430.1|CI511430
genomic: CAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAGgtttgtttct ... attcttgcagGTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCC
EST: GAAACCAGGAATGTCTGATGAGGAG TTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCCEST: gi|109712615|gb|CI105223.1|CI105223
genomic: GAAACCAGGAATGTCTGATGAGGAGgtttgtttct ... attcttgcagGTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCC
EST: CAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAG GTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCCEST: gi|88975066|gb|CI023317.1|CI023317
genomic: CAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAGgtttgtttct ... attcttgcagGTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCC
EST: CAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAG GTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCCEST: gi|88661613|gb|CI457222.1|CI457222
genomic: CAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAGgtttgtttct ... attcttgcagGTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCC
EST: CAGAGATAGCTATGAGAGCANATGGGAAACCAGGAATGTCTGATGAGGAG GTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCC
genomic: CAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAGgtttgtttct ... attcttgcagGTCATGGATTTTGTGTCGCGCTACCTACCAGCATACCACGCATATTTGCCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAGgtttgtttctcacatagctatgcattcattataacatcctattggcttcctttccgtcctagtttgataatttgctaatgccttgctgttactaaccgtc
- - - - - - - AGAGCA
- - - - - - - - GAGCAG
- - - - - - - - - GCAGAT
- - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - GAGGAG