1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GAACCTTGAGGCATACTACGATGCATGGGACAGGTTCATTGGGTCATGGATGGTCATAAAAATAAAGGAACCTAGTTGCGTGTACCAGTGGAGACTGCAGgtcattaccagatttatctaagtaactaatggtgtcagaaaatgcacaaccatgaattgcaattttcttatgttatttggatttacag
species | Oryza sativa |
transcript | LOC_Os01g48990.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CTAGTTGCGTNTACCAGTGGAGACTGCAG GCAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAGEST: gi|29687191|gb|CB683466.1|CB683466
genomic: CTAGTTGCGTGTACCAGTGGAGACTGCAGgtcattacca ... ggatttacagGCAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAG
EST: TGGTCATAAAAATAAAGGAACCTAGTTGCGTGTACCAGTGGAGACTGCAG GCAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAGEST: gi|89181456|gb|CI112962.1|CI112962
genomic: TGGTCATAAAAATAAAGGAACCTAGTTGCGTGTACCAGTGGAGACTGCAGgtcattacca ... ggatttacagGCAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAG
EST: TGGTCATAAAAATAAAGGAACCTAGTTGCGTGTACCAGTGGAGACTGCAG GCAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAGEST: gi|88224956|gb|CI224872.1|CI224872
genomic: TGGTCATAAAAATAAAGGAACCTAGTTGCGTGTACCAGTGGAGACTGCAGgtcattacca ... ggatttacagGCAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAG
EST: AAATAAAGGAACCTAGTTGCGTGTACCAGTGGAGACTGCAG GCAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAGEST: gi|86524944|gb|CI165150.1|CI165150
genomic: AAATAAAGGAACCTAGTTGCGTGTACCAGTGGAGACTGCAGgtcattacca ... ggatttacagGCAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAG
EST: TGGTCATAAAAATAAAGGAACCTAGTTGCGTGTACCAGTGGAGACTGCAG GCAGAGATAGCCATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAGEST: gi|88254825|gb|CI351453.1|CI351453
genomic: TGGTCATAAAAATAAAGGAACCTAGTTGCGTGTACCAGTGGAGACTGCAGgtcattacca ... ggatttacagGCAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAG
EST: TGTACCAGTGGAGACTGCAG GCAGAGATAGCTATGAGACCAGATGGGAAACCAGGAATGTCTGATGAGGAGEST: gi|86425592|gb|CI070689.1|CI070689
genomic: TGTACCAGTGGAGACTGCAGgtcattacca ... ggatttacagGCAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAG
EST: TGGTCATAAAAATAAAGGAACCTAGTTGCGTGTACCAGTGGAGACTGCAG GCAGAGANAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAGEST: gi|88228493|gb|CI227973.1|CI227973
genomic: TGGTCATAAAAATAAAGGAACCTAGTTGCGTGTACCAGTGGAGACTGCAGgtcattacca ... ggatttacagGCAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAG
EST: TGGTCATAAAAATAAAGGAACCTAGTTGCGTGTACCAGTGGAGACTGCAG GCAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAGEST: gi|86853793|gb|CI329239.1|CI329239
genomic: TGGTCATAAAAATAAAGGAACCTAGTTGCGTGTACCAGTGGAGACTGCAGgtcattacca ... ggatttacagGCAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAG
EST: TGGTCATAAAAATAAAGGAACCTAGTTGCGTGTACCAGTGGAGACTGCAG GCAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAGEST: gi|88318826|gb|CI508422.1|CI508422
genomic: TGGTCATAAAAATAAAGGAACCTAGTTGCGTGTACCAGTGGAGACTGCAGgtcattacca ... ggatttacagGCAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAG
EST: GCGTGTACCAGTGGAGACTGCAG GCAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAGEST: gi|86872693|gb|CI341903.1|CI341903
genomic: GCGTGTACCAGTGGAGACTGCAGgtcattacca ... ggatttacagGCAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAG
EST: TAAA-GAACCTAGTTGCGTGTACCAGTGGAGACTCCAG GCAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAGEST: gi|86865914|gb|CI335530.1|CI335530
genomic: TAAAGGAACCTAGTTGCGTGTACCAGTGGAGACTGCAGgtcattacca ... ggatttacagGCAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAG
EST: GTCATAAAAATAAAGGAACCTAGTTGCGTGTACCAATGGAGACTGCAG GCAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAGEST: gi|88539149|gb|CI468237.1|CI468237
genomic: GTCATAAAAATAAAGGAACCTAGTTGCGTGTACCAGTGGAGACTGCAGgtcattacca ... ggatttacagGCAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAG
EST: TACCAGTGGAGACTGCAG GCAGANATAGCTATTAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAGEST: gi|88995282|gb|CI036857.1|CI036857
genomic: TACCAGTGGAGACTGCAGgtcattacca ... ggatttacagGCAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAG
EST: TGGTCATAAAAATAAAGGAACCTAGTTGCGTGTACCAGTGGAGACTGCAG GCAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAGEST: gi|29626889|gb|CB631900.1|CB631900
genomic: TGGTCATAAAAATAAAGGAACCTAGTTGCGTGTACCAGTGGAGACTGCAGgtcattacca ... ggatttacagGCAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAG
EST: TGGTCATAAAAATAAAGGAACCTAGTTGCGTGTACCAGTGGAGACTGCAG GCAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAGEST: gi|88564728|gb|CI495445.1|CI495445
genomic: TGGTCATAAAAATAAAGGAACCTAGTTGCGTGTACCAGTGGAGACTGCAGgtcattacca ... ggatttacagGCAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAG
EST: CCAGTGGAGACTGCAG GCAGAGATAGCTATGAGAGGCAGATGGGAAACCAGGAATGTCTGATGAGGAEST: gi|86496003|gb|CI138636.1|CI138636
genomic: CCAGTGGAGACTGCAGgtcattacca ... ggatttacagGCAGAGATAGCTATGAGA-GCAGATGGGAAACCAGGAATGTCTGATGAGGA
EST: TGGTCATAAAAATAAAGGAACCTAGTTGCGTGTACCAGTGGAGAGTGCAG GCAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAGEST: gi|88549854|gb|CI479780.1|CI479780
genomic: TGGTCATAAAAATAAAGGAACCTAGTTGCGTGTACCAGTGGAGACTGCAGgtcattacca ... ggatttacagGCAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAG
EST: TTGCGTGTACCAGTGGAGACTGCAG GCAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAGEST: gi|109712615|gb|CI105223.1|CI105223
genomic: TTGCGTGTACCAGTGGAGACTGCAGgtcattacca ... ggatttacagGCAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAG
EST: TGGTCATAAAAATAAAGGAACCTAGTTGCGTGTACCAGTGGAGACTGCAG GCAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAGEST: gi|88975066|gb|CI023317.1|CI023317
genomic: TGGTCATAAAAATAAAGGAACCTAGTTGCGTGTACCAGTGGAGACTGCAGgtcattacca ... ggatttacagGCAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAG
EST: TGGTCATAAAAATAAAGGAACCTAGTTGCGTGTACCAGTGGAGACTGCAG GCAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAG
genomic: TGGTCATAAAAATAAAGGAACCTAGTTGCGTGTACCAGTGGAGACTGCAGgtcattacca ... ggatttacagGCAGAGATAGCTATGAGAGCAGATGGGAAACCAGGAATGTCTGATGAGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAACCTTGAGGCATACTACGATGCATGGGACAGGTTCATTGGGTCATGGATGGTCATAAAAATAAAGGAACCTAGTTGCGTGTACCAGTGGAGACTGCAGgtcattaccagatttatctaagtaactaatggtgtcagaaaatgcacaaccatgaattgcaattttcttatgttatttggatttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG