1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTTGGACCTGGGCCAGTCACCTATCCCCAGAGGCCTGGAGCAACTGTTTGTGATgtatgacagtctcttcgctatgaattattaactagctgattgatatcaactactttacgcatatagtctgggtgtgcctctacagcgttatgctcttttcttaatgcag
species | Oryza sativa |
transcript | LOC_Os01g42970.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GACCTGGGCCAGTCACCTATCCCCAGAGGCCTGGAGCAACTGTTTGTGAT TTCTACATGAAGACAGGATTTTGCAAGTTTGCTGACCGATGCAAGTTTCACEST: gi|38481213|gb|CF965302.1|CF965302
genomic: GACCTGGGCCAGTCACCTATCCCCAGAGGCCTGGAGCAACTGTTTGTGATgtatgacagt ... cttaatgcagTTCTACATGAAGACAGGATTTTGCAAGTTTGCTGACCGATGCAAGTTTCAC
EST: GACCTGGGCCAGTCACCTATCCCCAGAGGCCTGGAGCAACTGTTTGTGAT TTCTACATGAAGACAGGATTTTGCAAGTTTGCTGACCGATGCAAGTTTCACEST: gi|87024730|gb|CI259445.1|CI259445
genomic: GACCTGGGCCAGTCACCTATCCCCAGAGGCCTGGAGCAACTGTTTGTGATgtatgacagt ... cttaatgcagTTCTACATGAAGACAGGATTTTGCAAGTTTGCTGACCGATGCAAGTTTCAC
EST: CTGTTTGTGAT TTCTACATGAAGACAGGATTTTGCAAGTTTGCTGACCGATGCAAGTTTCACEST: gi|218499838|gb|FG962434.1|FG962434
genomic: CTGTTTGTGATgtatgacagt ... cttaatgcagTTCTACATGAAGACAGGATTTTGCAAGTTTGCTGACCGATGCAAGTTTCAC
EST: GACCTGGGCCAGTCACCTATCCCCAGAGGCCTGGAGCAACTGTTTGTGAT TTCTACATGAAGACAGGATTTTGCAAGTTTGCTGACCGATGCAAGTTTCACEST: gi|86540396|gb|CI180602.1|CI180602
genomic: GACCTGGGCCAGTCACCTATCCCCAGAGGCCTGGAGCAACTGTTTGTGATgtatgacagt ... cttaatgcagTTCTACATGAAGACAGGATTTTGCAAGTTTGCTGACCGATGCAAGTTTCAC
EST: GACCTGGGCCAGTCACCTATCCCCAGAGGCCTGGAGCAACTGTTTGTGAT TTCTACATGAAGACAGGATTTTGCAAGTTTGCTGACCGATGCAAGTTTCACEST: gi|86540864|gb|CI181070.1|CI181070
genomic: GACCTGGGCCAGTCACCTATCCCCAGAGGCCTGGAGCAACTGTTTGTGATgtatgacagt ... cttaatgcagTTCTACATGAAGACAGGATTTTGCAAGTTTGCTGACCGATGCAAGTTTCAC
EST: GACCTGGGCCAGTCACCTATCCCCAGAGGCCTGGAGCAACTGTTTGTGAT TTCTACATGAAGACAGGATTTTGCAAGTTTGCTGACCGATGCAAGTTTCACEST: gi|88850558|gb|CI093239.1|CI093239
genomic: GACCTGGGCCAGTCACCTATCCCCAGAGGCCTGGAGCAACTGTTTGTGATgtatgacagt ... cttaatgcagTTCTACATGAAGACAGGATTTTGCAAGTTTGCTGACCGATGCAAGTTTCAC
EST: ATCCCCAGAGGCCTGGAGCAACTGTTTGTGAT TTCTACATGAAGACAGGATTTTGCAAGTTTGCTGACCGATGCAAGTTTCAC
genomic: ATCCCCAGAGGCCTGGAGCAACTGTTTGTGATgtatgacagt ... cttaatgcagTTCTACATGAAGACAGGATTTTGCAAGTTTGCTGACCGATGCAAGTTTCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGGACCTGGGCCAGTCACCTATCCCCAGAGGCCTGGAGCAACTGTTTGTGATgtatgacagtctcttcgctatgaattattaactagctgattgatatcaactactttacgcatatagtctgggtgtgcctctacagcgttatgctcttttcttaatgcag
- - - - - - - - - - - - - - - - - - GGAGCA