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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGAATCTGTCCGGTCTTGTGAAGAGTAATATATCAGGGCAGCAAACTAGTACTGCACAGGGACTATATACTGGTCCTAACACAGCTCGgtgaaccttctgctttatcagagacaccctcttttgacaattttttctgcatattttaacctaactgacctttgtttgatgctttttggtatttaacag

Basic information

species Oryza sativa
transcript LOC_Os01g42490.2
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58599790|gb|CK010318.1|CK010318
EST:     CAGCAAACTAGTACTGCACAGGGACTATATAGTGGTCCTAACACAGCTCG                         ATTCTATCCGCCTTTTCACACGACGAATAGTAAGGAGGGTAGCATAAGTTA
genomic: CAGCAAACTAGTACTGCACAGGGACTATATACTGGTCCTAACACAGCTCGgtgaaccttc ... tatttaacagATTCTATCCGCCTTTTCACACGACGAATAGTAAGGAGGGTAGCATAAGTTA
EST: gi|29637192|gb|CB642201.1|CB642201
EST:     CAGCAAACTAGTACTGCACAGGGACTATATACTGGTCCTAACACAGCTCG                         ATTCTATCCGCCTTTTCACACGACGAATAGTAAGGAGGGTAGCATAAGTTA
genomic: CAGCAAACTAGTACTGCACAGGGACTATATACTGGTCCTAACACAGCTCGgtgaaccttc ... tatttaacagATTCTATCCGCCTTTTCACACGACGAATAGTAAGGAGGGTAGCATAAGTTA
EST: gi|300215928|gb|HO088554.1|HO088554
EST:     CAGCAAACTAGTACTGCACAGGGACTATATACTGGTCCTAACACAGCTCG                         ATTCTATCCGCCTTTTCACACGACGAATAGTAAGGAGGGTAGCATAAGTTA
genomic: CAGCAAACTAGTACTGCACAGGGACTATATACTGGTCCTAACACAGCTCGgtgaaccttc ... tatttaacagATTCTATCCGCCTTTTCACACGACGAATAGTAAGGAGGGTAGCATAAGTTA
EST: gi|33677736|gb|CF305975.1|CF305975
EST:     CAGCAAACTCGTACTGCACAGGGACTATATACTGGTCCTAACACAGCTCG                         ATTCTATCCGCCTTTTCACACGACGAATAGTAAGGAGGGTAGCATAAGTTA
genomic: CAGCAAACTAGTACTGCACAGGGACTATATACTGGTCCTAACACAGCTCGgtgaaccttc ... tatttaacagATTCTATCCGCCTTTTCACACGACGAATAGTAAGGAGGGTAGCATAAGTTA
EST: gi|33793336|gb|CF322549.1|CF322549
EST:     CAGCAAACTAGTACTGCACAGGGACTATATACTGGTCCTAACACAGCTCG                         ATTCTATCCGCCTTTTCACACGACGAATAGTAAGGAGGGTAGCATAAGTTA
genomic: CAGCAAACTAGTACTGCACAGGGACTATATACTGGTCCTAACACAGCTCGgtgaaccttc ... tatttaacagATTCTATCCGCCTTTTCACACGACGAATAGTAAGGAGGGTAGCATAAGTTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTGAATCTGTCCGGTCTTGTGAAGAGTAATATATCAGGGCAGCAAACTAGTACTGCACAGGGACTATATACTGGTCCTAACACAGCTCGgtgaaccttctgctttatcagagacaccctcttttgacaattttttctgcatattttaacctaactgacctttgtttgatgctttttggtatttaacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC