1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
GTCTCAAAGCTCAAATCAGTTTCTCCAACAAGAAAAACCAGGAATCGGAACTATGCCTGTTGATGGGGGCATGCCAAACTCTTTCGGTGGAGTTGATCAAgtataattcttatctgtacacatccatgcttgccatgctccatttgcattaatgcttagacctaatatactactgttcgttgtggtctgaattgatcact...
species | Oryza sativa |
transcript | LOC_Os01g42260.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CTATGCCTGTTGATGGGGGCATGCCAAACTCTTTCGGTGGAGTTGATCAA ACTACAAAGAAGAGGAAGAAACCTGGTTCATCCTCTGGTAGAGCCAATAGTEST: gi|58608601|gb|CK036634.1|CK036634
genomic: CTATGCCTGTTGATGGGGGCATGCCAAACTCTTTCGGTGGAGTTGATCAAgtataattct ... tgttgtccagACTACAAAGAAGAGGAAGAAACCTGGTTCATCCTCTGGTAGAGCCAATAGT
EST: CTATGCCTGTTGATGGGGGCATGCCAAACTCTTTCGGTGGAGTTGATCAA ACTACAAAGAAGAGGAAGAAACCTGGTTCATCCTCTGGTAGAGCCAATAGTEST: gi|58671957|gb|CK060643.1|CK060643
genomic: CTATGCCTGTTGATGGGGGCATGCCAAACTCTTTCGGTGGAGTTGATCAAgtataattct ... tgttgtccagACTACAAAGAAGAGGAAGAAACCTGGTTCATCCTCTGGTAGAGCCAATAGT
EST: CTATGCCTGTTGATGGGGGCATGCCAAACTCTTTCGGTGGAGTTGATCAA ACTACAAAGAAGAGGAAGAAACCTGGTTCATCCTCTGGTAGAGCCAATAGTEST: gi|58655398|gb|CK044078.1|CK044078
genomic: CTATGCCTGTTGATGGGGGCATGCCAAACTCTTTCGGTGGAGTTGATCAAgtataattct ... tgttgtccagACTACAAAGAAGAGGAAGAAACCTGGTTCATCCTCTGGTAGAGCCAATAGT
EST: CTATGCCTGTTGATGGGGGCATGCCAAACTCTTTCGGTGGAGTTGATCAA ACTACAAAGAAGAGGAAGAAACCTGGTTCATCCTCTGGTAGAGCCAATAGTEST: gi|33797972|gb|CF324846.1|CF324846
genomic: CTATGCCTGTTGATGGGGGCATGCCAAACTCTTTCGGTGGAGTTGATCAAgtataattct ... tgttgtccagACTACAAAGAAGAGGAAGAAACCTGGTTCATCCTCTGGTAGAGCCAATAGT
EST: CTATGCCTGTTGATGGGGGCATGCCAAACTCTTTCGGTGGAGTTGATCAA ACTACAAAGAAGAGGAAGAAACCTGGTTCATCCTCTGGTAGAGCCAATAGTEST: gi|58591655|gb|CF989963.1|CF989963
genomic: CTATGCCTGTTGATGGGGGCATGCCAAACTCTTTCGGTGGAGTTGATCAAgtataattct ... tgttgtccagACTACAAAGAAGAGGAAGAAACCTGGTTCATCCTCTGGTAGAGCCAATAGT
EST: CTATGCCTGTTGATGGGGGCATGCCAAACTCTTTCGGTGGAGTTGATCAA ACTACAAAGAAGAGGAAGAAACCTGGTTCATCCTCTGGTAGAGCCAATAGT
genomic: CTATGCCTGTTGATGGGGGCATGCCAAACTCTTTCGGTGGAGTTGATCAAgtataattct ... tgttgtccagACTACAAAGAAGAGGAAGAAACCTGGTTCATCCTCTGGTAGAGCCAATAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTCAAAGCTCAAATCAGTTTCTCCAACAAGAAAAACCAGGAATCGGAACTATGCCTGTTGATGGGGGCATGCCAAACTCTTTCGGTGGAGTTGATCAAgtataattcttatctgtacacatccatgcttgccatgctccatttgcattaatgcttagacctaatatactactgttcgttgtggtctgaattgatcact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG