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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATTTCTTGCTCGGACTTGTCTATGCTGTGGTGACACCATTTTTGCTTCCTTTCATATTAATATTCTTTGGGTTAGCATATGTGGTATACCGTCACCAGgtaataaccctttggaacactttgtgatttttagcactttgtgattaatcatgaatctgtccatcttttgttttggggtgccaagtgaaagtaattcttg...

Basic information

species Oryza sativa
transcript LOC_Os01g35050.4
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g35050.4 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G021194_T01 (Zea mays), 5'ss of exon 10
CTATTTCTTGCTCGGACTTGTCTATGCTGTGGTGACACCATTTTTGCTTCCTTTCATATTAATATTCTTTGGGTTAGCATATGTGGTATACCGTCACCAGgtaa-taaccctttggaacactttgtgatttttagcactttgtgattaatcatgaatctgtccatcttttgttttggggtgc---caagtgaaagtaattcttg
 |||||||| || || ||||||||||| |  ||||||||||||||||| |||||  |||| |||||||||||||| || || || |||||||| ||||||||||  || | | |   | |  |  | || | |     || |   |  |||  | ||       | | | ||  || | | |       || |  |||||    
GTATTTCTTACTTGGTCTTGTCTATGCGGCAGTGACACCATTTTTGCTCCCTTTTGTATTGATATTCTTTGGGTTTGCGTACGTTGTATACCGCCACCAGgtaagcaagcatatcataaatgtcctcatgtgttttctttagcattgcatctggcattgtgttgtttatcgtgctgtgctacatttgcatgcacataatt----

upper sequence: LOC_Os01g35050.4 (Oryza sativa), 5'ss of exon 10
lower sequence: GRMZM2G064189_T01 (Zea mays), 5'ss of exon 3
CTATTTCTTGCTCGGACTTGTCTATGCTGTGGTGACACCATTTTTGCTTCCTTTCATATTAATATTCTTTGGGTTAGCATATGTGGTATACCGTCACCAGgtaa-taaccctttggaacactttgtgatttttagcactttgtgattaatcatgaatctgtccatcttttgttttggggtgc---caagtgaaagtaattcttg--------------------------------------------------------------------------------
 |||||||| || || ||||||||||| |  ||||||||||||||||| |||||  |||| |||||||||||||| || || || |||||||| ||||||||||  || | | |   | |  |  | || | |     || |   |  |||  | ||       | | | ||  || | | |       ||    ||||| |                                                                                  
GTATTTCTTACTTGGTCTTGTCTATGCGGCAGTGACACCATTTTTGCTCCCTTTTGTATTGATATTCTTTGGGTTTGCGTACGTTGTATACCGCCACCAGgtaagcaagcatatcataaatgtcctcatgtgttttctttagcattgcatctggcattgtgttgtttatcgtgctgtgctacatttgcatgcgcataattatacatattagttagtgtgttgcatttgtttggttagaaattgacttaccctgatgcataacttacacagcttaactgtttcag

upper sequence: LOC_Os01g35050.4 (Oryza sativa), 5'ss of exon 10
lower sequence: Vv10s0116g00940.t01 (Vitis vinifera), 5'ss of exon 9
CTATTTCTTGCTCGGACTTGTCTATGCTGTGGTGACACCATTTTTGCTTCCTTTCATATTAATATTCTTTGGGTTAGCATATGTGGTATACCGTCACCAGgtaataaccctttggaacact--ttgtgatttttagcactttgtgattaatcatgaatctgtccatcttt-tgttttggggtgccaagtgaaagt--aattcttg
 ||||| || || || |||||||||||||||||||||||| |  | |||||||||||| |  | |||||| |  | |||||||| |||| ||| || ||||||| ||    |||  |   |  || | |  | |   |  |   |  |||||| || |  || ||      |  |   |  |||| | |   | |  |||  |  
ATATTTTTTACTGGGCCTTGTCTATGCTGTGGTGACACCAGTGCTACTTCCTTTCATAATTGTTTTCTTTTGCCTGGCATATGTCGTATTCCGCCATCAGgtaaaaag---ttgacattttgattataaaatcttaaatataaagggtaatcaggattgagtgcacaaacatcctcaagaatgcctattttcaatccaatatt--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29623286|gb|CB628297.1|CB628297
EST:     CTTTCATATTAATATTCTTTGGGTTAGCATATGTGGTATACCGTCACCAG                         ATAATAAATGTGTACAACCAAGAATATGAAAGTGCAGCAGCATTTTGGCCA
genomic: CTTTCATATTAATATTCTTTGGGTTAGCATATGTGGTATACCGTCACCAGgtaataaccc ... attgtttcagATAATAAATGTGTACAACCAAGAATATGAAAGTGCAGCAGCATTTTGGCCA
EST: gi|218495655|gb|FG950469.1|FG950469
EST:     CTTTCATATTAATATTCTTTGGGTTAGCATATGTGGTATACCGTCACCAG                         ATAATAAATGTGTACAACCAAGAATATGAAAGTGCAGCAGCATTTTGGCCA
genomic: CTTTCATATTAATATTCTTTGGGTTAGCATATGTGGTATACCGTCACCAGgtaataaccc ... attgtttcagATAATAAATGTGTACAACCAAGAATATGAAAGTGCAGCAGCATTTTGGCCA
EST: gi|86597881|gb|CI276667.1|CI276667
EST:     GTTAGCATATGTGGTATACCGTCACCAG                         ATAATAAATGTGTACAACCAAGAATATGAAAGTGCAGCAGCATTTTGGCCA
genomic: GTTAGCATATGTGGTATACCGTCACCAGgtaataaccc ... attgtttcagATAATAAATGTGTACAACCAAGAATATGAAAGTGCAGCAGCATTTTGGCCA
EST: gi|218496990|gb|FG950833.1|FG950833
EST:     CTTTCATATTAATATTCTTTGGGTTAGCATATGTGGTATACCGTCACCAG                         ATAATAAATGTGTACAACCAAGAATATGAAAGTGCAGCAGCATTTTGGCCA
genomic: CTTTCATATTAATATTCTTTGGGTTAGCATATGTGGTATACCGTCACCAGgtaataaccc ... attgtttcagATAATAAATGTGTACAACCAAGAATATGAAAGTGCAGCAGCATTTTGGCCA
EST: gi|66926022|gb|CX112870.1|CX112870
EST:     CTTTCATATTAATATTCTTTGGGTTAGCATATGTGGTATACCGTCACCAG                         ATAATAAATGTGTACAACCAA
genomic: CTTTCATATTAATATTCTTTGGGTTAGCATATGTGGTATACCGTCACCAGgtaataaccc ... attgtttcagATAATAAATGTGTACAACCAA
EST: gi|218495590|gb|FG944779.1|FG944779
EST:     CTTTCATATTAATATTCTTTGGGTTAGCATATGTGGTATACCGTCACCAG                         ATAATAAATGTGTACAACCAAGAATA
genomic: CTTTCATATTAATATTCTTTGGGTTAGCATATGTGGTATACCGTCACCAGgtaataaccc ... attgtttcagATAATAAATGTGTACAACCAAGAATA