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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCATTTTCCATAACATCAGCACCTGGAGATGATTATCTTAGTGTTCATATTCGCACAAGGGGTGATTGGACTTCACGGCTTAGAACTGTTTTCTCTGAGgtaattgaaccaactgccttttattttttttgctttgttctatagataaactcctaagaaacatgacttacgaactttgtaagcacctgaattgcattgtctttcatttgtcatatccaatttatctgcttgatggattcaatcgacaacaagtatgataacaaaatctttgaaccag

Basic information

species Oryza sativa
transcript LOC_Os01g25820.2
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27577180|gb|CA999874.1|CA999874
EST:     TTCGCACAAGGGGTGATTGGACTTCACGGCTTAGAACTGTTTTCTCTGAG                         GCATGCCGACCCCCCACTGAGGGAGAAAGTGGACTACTTAGAGCTGACCTT
genomic: TTCGCACAAGGGGTGATTGGACTTCACGGCTTAGAACTGTTTTCTCTGAGgtaattgaac ... tttgaaccagGCATGCCGACCCCCCACTGAGGGAGAAAGTGGACTACTTAGAGCTGACCTT
EST: gi|58665614|gb|CK054300.1|CK054300
EST:     TTCGCACAAGGGGTGATTGGACTTCACGGCTTAGAACTGTTTTCTCTGAG                         GCATGCCGACCCCCCACTGAGGGAGAAAGTGGACTACTTAGAGCTGACCTT
genomic: TTCGCACAAGGGGTGATTGGACTTCACGGCTTAGAACTGTTTTCTCTGAGgtaattgaac ... tttgaaccagGCATGCCGACCCCCCACTGAGGGAGAAAGTGGACTACTTAGAGCTGACCTT
EST: gi|29679760|gb|CB676035.1|CB676035
EST:     TTCGCACAAGGGGTGATTGGACTTCACGGCTTAGAACTGTTTTCTCTGAG                         GCATGCCGACCCCCCACTGAGGGAGAAAGTGGACTACTTAGAGCTGACCTT
genomic: TTCGCACAAGGGGTGATTGGACTTCACGGCTTAGAACTGTTTTCTCTGAGgtaattgaac ... tttgaaccagGCATGCCGACCCCCCACTGAGGGAGAAAGTGGACTACTTAGAGCTGACCTT
EST: gi|29686947|gb|CB683222.1|CB683222
EST:     TTCGCACAAGGGGTGATTGGACTTCACGGCTTAGAACTGTTTTCTCTGAG                         GCATGCCGACCCCCCACTGAGGGAGAAAGTGGACTACTTAGAGCTGACCTT
genomic: TTCGCACAAGGGGTGATTGGACTTCACGGCTTAGAACTGTTTTCTCTGAGgtaattgaac ... tttgaaccagGCATGCCGACCCCCCACTGAGGGAGAAAGTGGACTACTTAGAGCTGACCTT
EST: gi|27577154|gb|CA999848.1|CA999848
EST:     TTCGCACAAGGGGTGATTGGACTTCACGGCTTAGAACTGTTTTCTCTGAG                         GCATGCCGACCCCCCACTGAGGGAGAAAGTGGACTACTTAGAGCTGACCTT
genomic: TTCGCACAAGGGGTGATTGGACTTCACGGCTTAGAACTGTTTTCTCTGAGgtaattgaac ... tttgaaccagGCATGCCGACCCCCCACTGAGGGAGAAAGTGGACTACTTAGAGCTGACCTT
EST: gi|58670791|gb|CK059477.1|CK059477
EST:     TTCGCACAAGGGGTGATTGGACTTCACGGCTTAGAACTGTTTTCTCTGAG                         GCATGCCGACCCCCCACTGAGGGAGAAAGTGGACTACTTAGAGCTGACCTT
genomic: TTCGCACAAGGGGTGATTGGACTTCACGGCTTAGAACTGTTTTCTCTGAGgtaattgaac ... tttgaaccagGCATGCCGACCCCCCACTGAGGGAGAAAGTGGACTACTTAGAGCTGACCTT
EST: gi|27554471|gb|CA998371.1|CA998371
EST:     TTCGCACAAGGGGTGATTGGACTTCACGGCTTAGAACTGTTTTCTCTGAG                         GCATGCCGACCCCCCACTGAGGGAGAAAGTGGACTACTTAGAGCTGACCTT
genomic: TTCGCACAAGGGGTGATTGGACTTCACGGCTTAGAACTGTTTTCTCTGAGgtaattgaac ... tttgaaccagGCATGCCGACCCCCCACTGAGGGAGAAAGTGGACTACTTAGAGCTGACCTT
EST: gi|163925582|gb|EG715403.1|EG715403
EST:     TTCGCACAAGGGGTGATTGGACTTCACGGCTTAGAACTGTTTTCTCTGAG                         GCATGCCGACCCCCCACTGAGGGAGAAAGTGGACTACTTAGAGCTGACCTT
genomic: TTCGCACAAGGGGTGATTGGACTTCACGGCTTAGAACTGTTTTCTCTGAGgtaattgaac ... tttgaaccagGCATGCCGACCCCCCACTGAGGGAGAAAGTGGACTACTTAGAGCTGACCTT
EST: gi|27576530|gb|CA999224.1|CA999224
EST:     TTCGCACAAGGGGTGATTGGACTTCACGGCTTAGAACTGTTTTCTCTGAG                         GCATGCCGACCCCCCACTGAGGGAGAAAGTGGACTACTTAGAGCTGACCTT
genomic: TTCGCACAAGGGGTGATTGGACTTCACGGCTTAGAACTGTTTTCTCTGAGgtaattgaac ... tttgaaccagGCATGCCGACCCCCCACTGAGGGAGAAAGTGGACTACTTAGAGCTGACCTT