1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTATTCCATAAAAGGTTGCCTCCAGAAGCTGTTGATCTTGTCTCTAGGCTGCTCCAGTACTCACCCAACCTAAGATGCACTGCTgtaagtatatatttaatggttgaagtacagataaattagtattatggcacttagttcctgagataattgtgcagacattcatttcataaatattttctgttacctttgaccag
species | Oryza sativa |
transcript | LOC_Os01g14860.3 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: ATCTTGTCTCTAGGCTGCTCCAGTACTCACCCAACCTAAGATGCACTGCT GTGGAAGCACTTGTTCACCCATTCTNNGATGAGCTTCGNGNCNCTAATGCTEST: gi|88840799|gb|CI080253.1|CI080253
genomic: ATCTTGTCTCTAGGCTGCTCCAGTACTCACCCAACCTAAGATGCACTGCTgtaagtatat ... ctttgaccagGTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCT
EST: GATGCACTGCT GTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCTEST: gi|58686738|gb|CK075425.1|CK075425
genomic: GATGCACTGCTgtaagtatat ... ctttgaccagGTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCT
EST: AGGCTGCTCCAGTACTCACCCAACCTAAGATGCACTGCT GTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCTEST: gi|58687307|gb|CK075994.1|CK075994
genomic: AGGCTGCTCCAGTACTCACCCAACCTAAGATGCACTGCTgtaagtatat ... ctttgaccagGTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCT
EST: ATCTTGTCTCTAGGCTGGTCCAGTACTCAACCAAACTAAGATGCACTGCT GTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGAACCTAATGCTEST: gi|88830876|gb|CI079310.1|CI079310
genomic: ATCTTGTCTCTAGGCTGCTCCAGTACTCACCCAACCTAAGATGCACTGCTgtaagtatat ... ctttgaccagGTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCT
EST: GATGCACTGCT GTGGAAGCACTTGTTCACCCGTTCTTTGATGAGCTTCGAGACCCTAATGCTEST: gi|58679602|gb|CK068289.1|CK068289
genomic: GATGCACTGCTgtaagtatat ... ctttgaccagGTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCT
EST: ATCTTGTCTCTAGGCTGCTCCAGTACTCACCCAACCTAAGATGCACTGCT GTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCTEST: gi|58590369|gb|CF988677.1|CF988677
genomic: ATCTTGTCTCTAGGCTGCTCCAGTACTCACCCAACCTAAGATGCACTGCTgtaagtatat ... ctttgaccagGTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCT
EST: ATCTTGTCTCTAGGCTGCTCCAGTACTCACCCAANCTAAGATGCACTGCT GTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCTEST: gi|218498670|gb|FG952679.1|FG952679
genomic: ATCTTGTCTCTAGGCTGCTCCAGTACTCACCCAACCTAAGATGCACTGCTgtaagtatat ... ctttgaccagGTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCT
EST: ATCTTGTCTCTAGGCTGCTCCAGTACTCACCCAACCTAAGATGCACTGCT GTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCTEST: gi|58601780|gb|CK012308.1|CK012308
genomic: ATCTTGTCTCTAGGCTGCTCCAGTACTCACCCAACCTAAGATGCACTGCTgtaagtatat ... ctttgaccagGTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCT
EST: ATCTTGTCTCTAGGCTGCTCCAGTACTCACCCAACCTAAGATGCACTGCT GTGGAAGCACTTGTTCACCCATTCTTGGATGAGCTTCGAGACCCTAATGCTEST: gi|29618977|gb|CB623989.1|CB623989
genomic: ATCTTGTCTCTAGGCTGCTCCAGTACTCACCCAACCTAAGATGCACTGCTgtaagtatat ... ctttgaccagGTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCT
EST: ATCTTGTCTCTAGGCTGCTCCAGTACTCACCCAACCTAAGATGCACTGCT GTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCTEST: gi|58602991|gb|CK013519.1|CK013519
genomic: ATCTTGTCTCTAGGCTGCTCCAGTACTCACCCAACCTAAGATGCACTGCTgtaagtatat ... ctttgaccagGTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCT
EST: ATCTTGTCTCTAGGCTGCTCCAGTACTCACCCAACCTAAGATGCACTGCT GTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCTEST: gi|58689596|gb|CK078283.1|CK078283
genomic: ATCTTGTCTCTAGGCTGCTCCAGTACTCACCCAACCTAAGATGCACTGCTgtaagtatat ... ctttgaccagGTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCT
EST: CTAAGATGCACTGCT GTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCTEST: gi|58672614|gb|CK061300.1|CK061300
genomic: CTAAGATGCACTGCTgtaagtatat ... ctttgaccagGTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCT
EST: ATCTTGTCTCTAGGCTGCTCCAGTACTCACCCAACCTAAGATGCACTGCT GTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCTEST: gi|38469291|gb|CF953422.1|CF953422
genomic: ATCTTGTCTCTAGGCTGCTCCAGTACTCACCCAACCTAAGATGCACTGCTgtaagtatat ... ctttgaccagGTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCT
EST: ATCTTGTCTCTAGGCTGCTCCAGTACTCACCCAACCTAAGATGCACTGCT GTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCTEST: gi|218501699|gb|FG952639.1|FG952639
genomic: ATCTTGTCTCTAGGCTGCTCCAGTACTCACCCAACCTAAGATGCACTGCTgtaagtatat ... ctttgaccagGTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCT
EST: ATCTTGTCTCTAGGCTGCTCCAGTACTCACCCAACCTAAGATGCACTGCT GTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCTEST: gi|86593838|gb|CI260067.1|CI260067
genomic: ATCTTGTCTCTAGGCTGCTCCAGTACTCACCCAACCTAAGATGCACTGCTgtaagtatat ... ctttgaccagGTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCT
EST: ATCTTGTCTCTAGGCTGCTCCAGTACTCACCCAACCTAAGATGCACTGCT GTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCTEST: gi|55411037|gb|CV723413.1|CV723413
genomic: ATCTTGTCTCTAGGCTGCTCCAGTACTCACCCAACCTAAGATGCACTGCTgtaagtatat ... ctttgaccagGTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCT
EST: ATCTTGTCTCTAGGCTGCTCCAGTACTCACCCAACCTAAGATGCACTGCT GTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCTEST: gi|29677191|gb|CB673466.1|CB673466
genomic: ATCTTGTCTCTAGGCTGCTCCAGTACTCACCCAACCTAAGATGCACTGCTgtaagtatat ... ctttgaccagGTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCT
EST: ATCTTGTCTCTAGGCTGCTCCAGTACTCACCCAACCTAAGATGCACTGCT GTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCTEST: gi|88960574|gb|CI006535.1|CI006535
genomic: ATCTTGTCTCTAGGCTGCTCCAGTACTCACCCAACCTAAGATGCACTGCTgtaagtatat ... ctttgaccagGTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCT
EST: GATGCACTGCT GTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCTEST: gi|218501528|gb|FG953636.1|FG953636
genomic: GATGCACTGCTgtaagtatat ... ctttgaccagGTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCT
EST: ATCTTGTCTCTAGGCTGCTCCAGTACTCACCCAACCTAAGATGCACTGCT GTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCTEST: gi|58682391|gb|CK071078.1|CK071078
genomic: ATCTTGTCTCTAGGCTGCTCCAGTACTCACCCAACCTAAGATGCACTGCTgtaagtatat ... ctttgaccagGTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCT
EST: ATCTTGTCTCTAGGCTGCTCCAGTACTCACCCAACCTAAGATGCACTGCT GTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAEST: gi|87038213|gb|CI192835.1|CI192835
genomic: ATCTTGTCTCTAGGCTGCTCCAGTACTCACCCAACCTAAGATGCACTGCTgtaagtatat ... ctttgaccagGTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGA
EST: ATCTTGTCTCTAGGCTGCTCCAGTACTCACCCAACCTAAGATGCACTGCT GTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCTEST: gi|66918477|gb|CX105325.1|CX105325
genomic: ATCTTGTCTCTAGGCTGCTCCAGTACTCACCCAACCTAAGATGCACTGCTgtaagtatat ... ctttgaccagGTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCT
EST: ATCTTGTCTCTAGGCTGCTCCAGTACTCACCCAACCTAAGATGCACTGCT GTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCTEST: gi|87007029|gb|CI275337.1|CI275337
genomic: ATCTTGTCTCTAGGCTGCTCCAGTACTCACCCAACCTAAGATGCACTGCTgtaagtatat ... ctttgaccagGTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCT
EST: ATCTTGTCTCTAGGCTGCTCCAGTACTCACCCAACCTAAGATGCACTGCT GTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCTEST: gi|33691829|gb|CF320068.1|CF320068
genomic: ATCTTGTCTCTAGGCTGCTCCAGTACTCACCCAACCTAAGATGCACTGCTgtaagtatat ... ctttgaccagGTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCT
EST: AAGATGCACTGCT GTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCTEST: gi|2317500|gb|C22554.1|C22554
genomic: AAGATGCACTGCTgtaagtatat ... ctttgaccagGTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCT
EST: ATCTTGTCTCTAGGCTGCTCCAGTACTCACCCAACCTAAGATGCACTGCT GTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCT
genomic: ATCTTGTCTCTAGGCTGCTCCAGTACTCACCCAACCTAAGATGCACTGCTgtaagtatat ... ctttgaccagGTGGAAGCACTTGTTCACCCATTCTTTGATGAGCTTCGAGACCCTAATGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATTCCATAAAAGGTTGCCTCCAGAAGCTGTTGATCTTGTCTCTAGGCTGCTCCAGTACTCACCCAACCTAAGATGCACTGCTgtaagtatatatttaatggttgaagtacagataaattagtattatggcacttagttcctgagataattgtgcagacattcatttcataaatattttctgttacctttgaccag
- - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG