1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CATGGTTTCTATAGACATGCCTGCTGGCCCTTCAGAAGTATTAGTGATAGCGGATAAATATGCAAACCCAGTTCATGTTGCTGCTGATTTGTTATCTCAGgtatcttctattcttaataccctgcttcatactggtgaaatgtgtacttgttattgaacttcctttactctttgaaatgccatatttgagaatctgaggcataggaattacatgatgtcgtgaagctttgttaagtatcatattatattatataacagttgttcgttcaaaattttag
species | Oryza sativa |
transcript | LOC_Os01g13190.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CGGATAAATATGCAAACCCAGTTCATGTTGCTGCTGATTTGTTATCTCAG GCGGAACATGGCCCAGACAGTCAGGTTGTTCTAGTTGTTGCGGGAGACGGTEST: gi|86493486|gb|CI136119.1|CI136119
genomic: CGGATAAATATGCAAACCCAGTTCATGTTGCTGCTGATTTGTTATCTCAGgtatcttcta ... aaaattttagGCGGAACATGGCCCAGACAGTCAGGTTGTTCTAGTTGTTGCGGGAGACGGT
EST: TTGTTATCTCAG GCGGAACATGGCCCAGACAGTCAGGTTGTTCTAGTTGTTGCGGGAGACGGTEST: gi|29680233|gb|CB676508.1|CB676508
genomic: TTGTTATCTCAGgtatcttcta ... aaaattttagGCGGAACATGGCCCAGACAGTCAGGTTGTTCTAGTTGTTGCGGGAGACGGT
EST: GATAAATATGCAAACCCAGTTCATGTTGCTGCTGATTTGTTATCTCAG GCGGAACATGGCCCAGACAGTCAGGTTGTTCTAGTTGTTGCGGGAGACGGTEST: gi|29662202|gb|CB658477.1|CB658477
genomic: GATAAATATGCAAACCCAGTTCATGTTGCTGCTGATTTGTTATCTCAGgtatcttcta ... aaaattttagGCGGAACATGGCCCAGACAGTCAGGTTGTTCTAGTTGTTGCGGGAGACGGT
EST: CGGATAAATATGCAAACCCAGTTCATGTTGCTGCTGATTTGTTATCTCAG GCGGAACATGGCCCAGACAGTCAGGTTGTTCTAGTTGTTGCGGGAGACGGTEST: gi|29683233|gb|CB679508.1|CB679508
genomic: CGGATAAATATGCAAACCCAGTTCATGTTGCTGCTGATTTGTTATCTCAGgtatcttcta ... aaaattttagGCGGAACATGGCCCAGACAGTCAGGTTGTTCTAGTTGTTGCGGGAGACGGT
EST: CGGATAAATATGCAAACCCAGTTCATGTTGCTGCTGATTTGTTATCTCAG GCGGAACATGGCCCAGACAGTCAGGTTGTTCTAGTTGTTGCGGGAGACGGTEST: gi|87017573|gb|CI289706.1|CI289706
genomic: CGGATAAATATGCAAACCCAGTTCATGTTGCTGCTGATTTGTTATCTCAGgtatcttcta ... aaaattttagGCGGAACATGGCCCAGACAGTCAGGTTGTTCTAGTTGTTGCGGGAGACGGT
EST: CGGATAAATATGCAAACCCAGTTCATGTTGCTGCTGATTTGTTATCTCAG GCGGAACATGGCCCAGACAGTCAGGTTGTTCTAGTTGTTGCGGGAGACGGTEST: gi|58666767|gb|CK055453.1|CK055453
genomic: CGGATAAATATGCAAACCCAGTTCATGTTGCTGCTGATTTGTTATCTCAGgtatcttcta ... aaaattttagGCGGAACATGGCCCAGACAGTCAGGTTGTTCTAGTTGTTGCGGGAGACGGT
EST: CGGATAAATATGCAAACCCAGTTCATGTTGCTGCTGATTTGTTATCTCAG GCGGAACATGGCCCAGACAGTCAGGTTGTTCTAGTTGTTGCGGGAGACGGTEST: gi|86831296|gb|CI297565.1|CI297565
genomic: CGGATAAATATGCAAACCCAGTTCATGTTGCTGCTGATTTGTTATCTCAGgtatcttcta ... aaaattttagGCGGAACATGGCCCAGACAGTCAGGTTGTTCTAGTTGTTGCGGGAGACGGT
EST: TATGCAAACCCAGTTCATGTTGCTGCTGATTTGTTATCTCAG GCGGAACATGGCCCAGACAGTCAGGTTGTTCTAGTTGTTGCGGGAGACGGTEST: gi|29663864|gb|CB660139.1|CB660139
genomic: TATGCAAACCCAGTTCATGTTGCTGCTGATTTGTTATCTCAGgtatcttcta ... aaaattttagGCGGAACATGGCCCAGACAGTCAGGTTGTTCTAGTTGTTGCGGGAGACGGT
EST: CGGATAAATATGCAAACCCAGTTCATGTTGCTGCTGATTTGTTATCTCAG GCGGAACATGGCCCAGACAGTCAGGTTGTTCTAGTTGTTGCGGGAGACGGT
genomic: CGGATAAATATGCAAACCCAGTTCATGTTGCTGCTGATTTGTTATCTCAGgtatcttcta ... aaaattttagGCGGAACATGGCCCAGACAGTCAGGTTGTTCTAGTTGTTGCGGGAGACGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATGGTTTCTATAGACATGCCTGCTGGCCCTTCAGAAGTATTAGTGATAGCGGATAAATATGCAAACCCAGTTCATGTTGCTGCTGATTTGTTATCTCAGgtatcttctattcttaataccctgcttcatactggtgaaatgtgtacttgttattgaacttcctttactctttgaaatgccatatttgagaatctgaggcataggaattacatgatgtcgtgaagctttgttaagtatcatattatattatataacagttgttcgttcaaaattttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT