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TCTCGAGGCACCACCATCATGGGCCCCAGATGCACTTGATGCAGCAGTACAGCTTGTTGAACTCCTTAGAGCAGCGGAAGATTACGATTCTGGCATGCGGgtatatcatacatctctctggctgttgtttcagtgctatcaatcaagatgacacatcatgcaatattatcataacagcacattatgtgttttgaatattttattgattgtcatagctttgttttatgttttag
species | Oryza sativa |
transcript | LOC_Os01g08700.5 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AGCTTGTTGAACTCCTTAGAGCAGCGGAAGATTACGATTCTGGCATGCGG CTTCCAAAGAACTGGATGCATCTTCATTTCCTGCGTGCTATTGGAACTGCAEST: gi|33675353|gb|CF303592.1|CF303592
genomic: AGCTTGTTGAACTCCTTAGAGCAGCGGAAGATTACGATTCTGGCATGCGGgtatatcata ... tatgttttagCTTCCAAAGAACTGGATGCATCTTCATTTCCTGCGTGCTATTGGAACTGCA
EST: TGAACTCCTTAGAGCAGCGGAAGATTACGATTCTGGCATGCGG CTTCCAAAGAACTGGATGCATCTTCATTTCCTGCGTGCTATTGGAACTGCAEST: gi|88762368|gb|CI771924.1|CI771924
genomic: TGAACTCCTTAGAGCAGCGGAAGATTACGATTCTGGCATGCGGgtatatcata ... tatgttttagCTTCCAAAGAACTGGATGCATCTTCATTTCCTGCGTGCTATTGGAACTGCA
EST: AGCTTGTTGAACTCCTTAGAGCAGCGGAAGATTACGATTCTGGCATGCGG CTTCCAAAGAACTGGATGCATCTTCATTTCCTGCGTGCTATTGGAACTGCAEST: gi|58688764|gb|CK077451.1|CK077451
genomic: AGCTTGTTGAACTCCTTAGAGCAGCGGAAGATTACGATTCTGGCATGCGGgtatatcata ... tatgttttagCTTCCAAAGAACTGGATGCATCTTCATTTCCTGCGTGCTATTGGAACTGCA
EST: CTTGTTGAACTCCTTAGAGCAGCGGAAGATTACGATTCTGGCATGCGG CTTCCAAAGAACTGGATGCATCTTCATTTCCTGCGTGCTATTGGAACTGCAEST: gi|29631643|gb|CB636652.1|CB636652
genomic: CTTGTTGAACTCCTTAGAGCAGCGGAAGATTACGATTCTGGCATGCGGgtatatcata ... tatgttttagCTTCCAAAGAACTGGATGCATCTTCATTTCCTGCGTGCTATTGGAACTGCA
EST: AGCTTGTTGAACTCCTTAGAGCAGCGGAAGATTACGATTCTGGCATGCGG CTTCCAAAGAACTGGATGCATCTTCATTTCCTGCGTGCTATTGGAACTGCAEST: gi|29678221|gb|CB674496.1|CB674496
genomic: AGCTTGTTGAACTCCTTAGAGCAGCGGAAGATTACGATTCTGGCATGCGGgtatatcata ... tatgttttagCTTCCAAAGAACTGGATGCATCTTCATTTCCTGCGTGCTATTGGAACTGCA
EST: AGCTTGTTGAACTCCTTAGAGCAGCGGAAGATTACGATTCTGGCATGCGG CTTCCAAAGAACTGGATGCATCTTCATTTCCTGCGTGCTATTGGAACTGCAEST: gi|88825885|gb|CI776450.1|CI776450
genomic: AGCTTGTTGAACTCCTTAGAGCAGCGGAAGATTACGATTCTGGCATGCGGgtatatcata ... tatgttttagCTTCCAAAGAACTGGATGCATCTTCATTTCCTGCGTGCTATTGGAACTGCA
EST: AGCTTGTTGAACTCCTTAGAGCAGCGGAAGATTACGATTCTGGCATGCGG CTTCCAAAGAACTGGATGCATCTTCATTTCCTGCGTGCTATEST: gi|33676336|gb|CF304575.1|CF304575
genomic: AGCTTGTTGAACTCCTTAGAGCAGCGGAAGATTACGATTCTGGCATGCGGgtatatcata ... tatgttttagCTTCCAAAGAACTGGATGCATCTTCATTTCCTGCGTGCTAT
EST: TGAACTCCTTAGAGCAGCGGAAGATTACGATTCTGGCATGCGG CTTCCAAAGAACTGGATGCATCTTCATTTCCTGCGTGCTATTGGAACTGCAEST: gi|58687558|gb|CK076245.1|CK076245
genomic: TGAACTCCTTAGAGCAGCGGAAGATTACGATTCTGGCATGCGGgtatatcata ... tatgttttagCTTCCAAAGAACTGGATGCATCTTCATTTCCTGCGTGCTATTGGAACTGCA
EST: AGCTTGTTGAACTCCTTAGAGCAGCGGAAGATTACGATTCTGGCATGCGG CTTCCAAAGAACTGGATGCATCTTCATTTCCTGCGTGCTATTGGAACTGCAEST: gi|29635195|gb|CB640204.1|CB640204
genomic: AGCTTGTTGAACTCCTTAGAGCAGCGGAAGATTACGATTCTGGCATGCGGgtatatcata ... tatgttttagCTTCCAAAGAACTGGATGCATCTTCATTTCCTGCGTGCTATTGGAACTGCA
EST: AGCTTGTTGAACTCCTTAGAGCAGCGGAAGATTACGATTCTGGCATGCGG CTTCCAAAGAACTGGATGCATCTTCATTTCCTGCGTGCTATTGGAACTGCAEST: gi|29662456|gb|CB658731.1|CB658731
genomic: AGCTTGTTGAACTCCTTAGAGCAGCGGAAGATTACGATTCTGGCATGCGGgtatatcata ... tatgttttagCTTCCAAAGAACTGGATGCATCTTCATTTCCTGCGTGCTATTGGAACTGCA
EST: GATTCTGGCATGCGG CTTCCAAAGAACTGGATGCATCTTCATTTCCTGCGTGCTATTGGAACTGCAEST: gi|88745659|gb|CI769019.1|CI769019
genomic: GATTCTGGCATGCGGgtatatcata ... tatgttttagCTTCCAAAGAACTGGATGCATCTTCATTTCCTGCGTGCTATTGGAACTGCA
EST: AGCTTGTTGAACTCCTTAGAGCAGCGGAAGATTACGATTCTGGCATGCGG CTTCCAAAGAACTGGATGCATCTTCATTTCCTGCGTGCTATTGGAACTGCAEST: gi|33800019|gb|CF325875.1|CF325875
genomic: AGCTTGTTGAACTCCTTAGAGCAGCGGAAGATTACGATTCTGGCATGCGGgtatatcata ... tatgttttagCTTCCAAAGAACTGGATGCATCTTCATTTCCTGCGTGCTATTGGAACTGCA
EST: AGCTTGTTGAACTCCTTAGAGCAGCGGAAGATTACGATTCTGGCATGCGG CTTCCAAAGAACTGGATGCATCTTCATTTCCTGCGTGCTATTGGAACTGCAEST: gi|88760813|gb|CI770369.1|CI770369
genomic: AGCTTGTTGAACTCCTTAGAGCAGCGGAAGATTACGATTCTGGCATGCGGgtatatcata ... tatgttttagCTTCCAAAGAACTGGATGCATCTTCATTTCCTGCGTGCTATTGGAACTGCA
EST: AGCTTGTTGAACTCCTTAGAGCAGCGGAAGATTACGATTCTGGCATGCGG CTTCCAAAGAACTGGATGCATCTTCATTTCCTGCGTGCTATTGGAACTGCAEST: gi|88743735|gb|CI767243.1|CI767243
genomic: AGCTTGTTGAACTCCTTAGAGCAGCGGAAGATTACGATTCTGGCATGCGGgtatatcata ... tatgttttagCTTCCAAAGAACTGGATGCATCTTCATTTCCTGCGTGCTATTGGAACTGCA
EST: AGCTTGTTGAACTCCTTAGAGCAGCGGAAGATTACGATTCTGGCATGCGG CTTCCAAAGAACTGGATGCATCTTCATTTCCTGEST: gi|29683422|gb|CB679697.1|CB679697
genomic: AGCTTGTTGAACTCCTTAGAGCAGCGGAAGATTACGATTCTGGCATGCGGgtatatcata ... tatgttttagCTTCCAAAGAACTGGATGCATCTTCATTTCCTG
EST: AGCTTGTTGAACTCCTTAGAGCAGCGGAAGATTACGATTCTGGCATGCGG CTTCCAAAGAACTGGATGCATCTTCATTTCCTGCGTGCTATTGGAACTGCAEST: gi|29664618|gb|CB660893.1|CB660893
genomic: AGCTTGTTGAACTCCTTAGAGCAGCGGAAGATTACGATTCTGGCATGCGGgtatatcata ... tatgttttagCTTCCAAAGAACTGGATGCATCTTCATTTCCTGCGTGCTATTGGAACTGCA
EST: AGCTTGTTGAACTCCTTAGAGCAGCGGAAGATTACGATTCTGGCATGCGG CTTCCAAAGAACTGGATGCATCTTCATTTCCTGCGTGCTATTGGAACTGCAEST: gi|58605455|gb|CK033488.1|CK033488
genomic: AGCTTGTTGAACTCCTTAGAGCAGCGGAAGATTACGATTCTGGCATGCGGgtatatcata ... tatgttttagCTTCCAAAGAACTGGATGCATCTTCATTTCCTGCGTGCTATTGGAACTGCA
EST: GCAGCGGAAGATTACGATTCTGGCATGCGG CTTCCAAAGAACTGGATGCATCTTCATTTCCTGCGTGCTATTGGAACTGCAEST: gi|29657250|gb|CB653525.1|CB653525
genomic: GCAGCGGAAGATTACGATTCTGGCATGCGGgtatatcata ... tatgttttagCTTCCAAAGAACTGGATGCATCTTCATTTCCTGCGTGCTATTGGAACTGCA
EST: AGCTTGTTGAACTCCTTAGAGCAGCGGAAGATTACGATTCTGGCATGCGG CTTCCAAAGAACTGGATGCATCTTCATTTCCTGCGTGCTATTGGAACTGCAEST: gi|33799165|gb|CF325440.1|CF325440
genomic: AGCTTGTTGAACTCCTTAGAGCAGCGGAAGATTACGATTCTGGCATGCGGgtatatcata ... tatgttttagCTTCCAAAGAACTGGATGCATCTTCATTTCCTGCGTGCTATTGGAACTGCA
EST: AGCTTGTTGAACTCCTTAGAGCAGCGGAAGATTACGATTCTGGCATGCGG CTTCCAAAGAACTGGATGCATCTTCATTTCCTGCGTGCTATTGGAACTGCAEST: gi|33801382|gb|CF326562.1|CF326562
genomic: AGCTTGTTGAACTCCTTAGAGCAGCGGAAGATTACGATTCTGGCATGCGGgtatatcata ... tatgttttagCTTCCAAAGAACTGGATGCATCTTCATTTCCTGCGTGCTATTGGAACTGCA
EST: AGCTTGTTGAACTCCTTAGAGCAGCGGAAGATTACGATTCTGGCATGCGG CTTCCAAAGAACTGGATGCATCTTCATTTCCTGCGTGCTATTGGAACTGCAEST: gi|88734762|gb|CI758270.1|CI758270
genomic: AGCTTGTTGAACTCCTTAGAGCAGCGGAAGATTACGATTCTGGCATGCGGgtatatcata ... tatgttttagCTTCCAAAGAACTGGATGCATCTTCATTTCCTGCGTGCTATTGGAACTGCA
EST: AGCTTGTTGAACTCCTTAGAGCAGCGGAAGATTACGATTCTGGCATGCGG CTTCCAAAGAACTGGATEST: gi|33798134|gb|CF324927.1|CF324927
genomic: AGCTTGTTGAACTCCTTAGAGCAGCGGAAGATTACGATTCTGGCATGCGGgtatatcata ... tatgttttagCTTCCAAAGAACTGGAT
EST: AGCTTGTTGAACTCCTTAGAGCAGCGGAAGATTACGATTCTGGCATGCGG CTTCCAAAGAACTGGATGCATCTTCATTTCCTGCGTGCTATTGGAACTGCAEST: gi|29623544|gb|CB628555.1|CB628555
genomic: AGCTTGTTGAACTCCTTAGAGCAGCGGAAGATTACGATTCTGGCATGCGGgtatatcata ... tatgttttagCTTCCAAAGAACTGGATGCATCTTCATTTCCTGCGTGCTATTGGAACTGCA
EST: AGCTTGTTGAACTCCTTAGAGCAGCGGAAGATTACGATTCTGGCATGCGG CTTCCAAAGAACTGGATGCATCTTCATTTCCTGCGTGCTATTGGAACTGCAEST: gi|88732076|gb|CI757253.1|CI757253
genomic: AGCTTGTTGAACTCCTTAGAGCAGCGGAAGATTACGATTCTGGCATGCGGgtatatcata ... tatgttttagCTTCCAAAGAACTGGATGCATCTTCATTTCCTGCGTGCTATTGGAACTGCA
EST: AGCTTGTTGAACTCCTTAGAGCAGCGGAAGATTACGATTCTGGCATGCGG CTTCCAAAGAACTGGATGCATCTTCATTTCCTGCGTGCTATTGGAACTGCAEST: gi|58695779|gb|CK084466.1|CK084466
genomic: AGCTTGTTGAACTCCTTAGAGCAGCGGAAGATTACGATTCTGGCATGCGGgtatatcata ... tatgttttagCTTCCAAAGAACTGGATGCATCTTCATTTCCTGCGTGCTATTGGAACTGCA
EST: AGCTTGTTGAACTCCTTAGAGCAGCGGAAGATTACGATTCTGGCATGCGG CTTCCAAAGAACTGGATGCATCTTCATTTCCTGCGTGCTATTGGAACTGCA
genomic: AGCTTGTTGAACTCCTTAGAGCAGCGGAAGATTACGATTCTGGCATGCGGgtatatcata ... tatgttttagCTTCCAAAGAACTGGATGCATCTTCATTTCCTGCGTGCTATTGGAACTGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTCGAGGCACCACCATCATGGGCCCCAGATGCACTTGATGCAGCAGTACAGCTTGTTGAACTCCTTAGAGCAGCGGAAGATTACGATTCTGGCATGCGGgtatatcatacatctctctggctgttgtttcagtgctatcaatcaagatgacacatcatgcaatattatcataacagcacattatgtgttttgaatattttattgattgtcatagctttgttttatgttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA