1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
GGACAAGAAGGAATACACCCTCGTATGTTTAAGACAGTTATTGCTGCAAAGCATCCCGAATTTTCCAGTATGAGGCAACAGgtactttggacctggaatcacacatttttggttgaggagctacttatttgaattttcctttgcatcattaactgcaattttgggtacaattttttccaaatagtcattttaactcatctctttgtccag
species | Oryza sativa |
transcript | LOC_Os01g08200.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AGACAGTTATTGCTGCAAAGCATCCCGAATTTTCCAGTATGAGGCAACAG GATGCGCTTGATTTCTTCCTTCATCTTATTGACCAAGTTGATCAGGEST: gi|58682680|gb|CK071367.1|CK071367
genomic: AGACAGTTATTGCTGCAAAGCATCCCGAATTTTCCAGTATGAGGCAACAGgtactttgga ... ctttgtccagGATGCGCTTGATTTCTTCCTTCATCTTATTGACCAAGTTGATCAGG
EST: AGACAGTTATTGCTGCAAAGCATCCCGAATTTTCCAGTATGAGGCAACAG GATGCGCTTGATTTCTTCCTTCATCTTATTGACCAAGTTGATCAGGCAAACEST: gi|29622184|gb|CB627195.1|CB627195
genomic: AGACAGTTATTGCTGCAAAGCATCCCGAATTTTCCAGTATGAGGCAACAGgtactttgga ... ctttgtccagGATGCGCTTGATTTCTTCCTTCATCTTATTGACCAAGTTGATCAGGCAAAC
EST: AGACAGTTATTGCTGCAAAGCATCCCGAATTTTCCAGTATGATGCAACAG GATGCGCTTGATTTCTTCCTTCATCTTATTGACCAAGTTGATCAGGCAAACEST: gi|58672449|gb|CK061135.1|CK061135
genomic: AGACAGTTATTGCTGCAAAGCATCCCGAATTTTCCAGTATGAGGCAACAGgtactttgga ... ctttgtccagGATGCGCTTGATTTCTTCCTTCATCTTATTGACCAAGTTGATCAGGCAAAC
EST: AGACAGTTATTGCTGCAAAGCATCCCGAATTTTCCAGTATGAGGCAACAG GATGCGCTTGATTTCTTCCTTCATCTTATTGACCAAGTTGATCAGGCAAACEST: gi|58661919|gb|CK050599.1|CK050599
genomic: AGACAGTTATTGCTGCAAAGCATCCCGAATTTTCCAGTATGAGGCAACAGgtactttgga ... ctttgtccagGATGCGCTTGATTTCTTCCTTCATCTTATTGACCAAGTTGATCAGGCAAAC
EST: AGACAGTTATTGCTGCAAAGCATCCCGAATTTTCCAGTATGAGGCAACAG GATGCGCTTGATTTCTTCCTTCATCTTATTGACCAAGTTGATCAGGCAAAC
genomic: AGACAGTTATTGCTGCAAAGCATCCCGAATTTTCCAGTATGAGGCAACAGgtactttgga ... ctttgtccagGATGCGCTTGATTTCTTCCTTCATCTTATTGACCAAGTTGATCAGGCAAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGACAAGAAGGAATACACCCTCGTATGTTTAAGACAGTTATTGCTGCAAAGCATCCCGAATTTTCCAGTATGAGGCAACAGgtactttggacctggaatcacacatttttggttgaggagctacttatttgaattttcctttgcatcattaactgcaattttgggtacaattttttccaaatagtcattttaactcatctctttgtccag
- - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - GCAAAG