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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTGCCTATCTCATGTCCCAGTCTTCTTTGCACAGTCAAAATATCAGgtttacctctgttcatctttttaacgtaggacaatgttcagtttagatttgcagaactttgatgtttgctttaatttgttgttaatacag

Basic information

species Oryza sativa
transcript LOC_Os01g05510.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86882171|gb|CI325687.1|CI325687
EST:     CACAGTCAAAATATCAG                         ATGATCCAGAGTATCGTGCGTCTAAGGCACTCACTGCAAAGAGAGAACCAG
genomic: CACAGTCAAAATATCAGgtttacctct ... gttaatacagATGATCCAGAGTATCGTGCGTCTAAGGCACTCACTGCAAAGAGAGAACCAG
EST: gi|29640997|gb|CB646004.1|CB646004
EST:     AGCTGCCTATCTCATGTCCCAGTCTTCTTTGCACAGTCAAAATATCAG                         ATGATCCAGAGTATCGTGCGTCTAAGGCACTCACTGCAAAGAGAGAACCAG
genomic: AGCTGCCTATCTCATGTCCCAGTCTTCTTTGCACAGTCAAAATATCAGgtttacctct ... gttaatacagATGATCCAGAGTATCGTGCGTCTAAGGCACTCACTGCAAAGAGAGAACCAG
EST: gi|88843164|gb|CI372064.1|CI372064
EST:     TTGCACAGTCAAAATATCAG                         ATGATCCAGAGTATCGTGCGTCTAAGGCACTCACTGCAAAGAGAGAACCAG
genomic: TTGCACAGTCAAAATATCAGgtttacctct ... gttaatacagATGATCCAGAGTATCGTGCGTCTAAGGCACTCACTGCAAAGAGAGAACCAG
EST: gi|86873537|gb|CI329915.1|CI329915
EST:     AGTCAAAATATCAG                         ATGATCCAGAGTATCGTGCGTCTAAGGCACTCACTGCAAAGAGAGAACCAG
genomic: AGTCAAAATATCAGgtttacctct ... gttaatacagATGATCCAGAGTATCGTGCGTCTAAGGCACTCACTGCAAAGAGAGAACCAG