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GGTAATGGATAGGCTGCCTGGAGTAAGAATTGCATTTATTGGAGATGGACCATACAGgtatatcatatgtggttccttgccattttatatactatatctttttttttcctaagcttccagtttgtcatgaacagcggcagctcaaaatttattgcat...
species | Oryza sativa |
transcript | LOC_Os01g04920.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GATAGGCTGCCTGGAGTAAGAATTGCATTTATTGGAGATGGACCATACAG GAGTGAGCTGGAGAAGATGTTTGAGGGGATGCCTGCCGTGTTCACTGGAATEST: gi|29617870|gb|CB622882.1|CB622882
genomic: GATAGGCTGCCTGGAGTAAGAATTGCATTTATTGGAGATGGACCATACAGgtatatcata ... tacatgacagGAGTGAGCTGGAGAAGATGTTTGAGGGGATGCCTGCCGTGTTCACTGGAAT
EST: GATAGGCTGCCTGGAGTAAGAATTGCATTTATTGGAGATGGACCATACAG GAGTGAGCTGGAGAAGATGTTTGAGGGGATGCCTGCCGTGTTCACTGGAATEST: gi|58662804|gb|CK051490.1|CK051490
genomic: GATAGGCTGCCTGGAGTAAGAATTGCATTTATTGGAGATGGACCATACAGgtatatcata ... tacatgacagGAGTGAGCTGGAGAAGATGTTTGAGGGGATGCCTGCCGTGTTCACTGGAAT
EST: GATAGGCTGCCTGGAGTAAGAATTGCATTTATTGGAGATGGACCATACAG GAGTGAGCTGGAGAAGATGTTTGAGGGGATGCCTGCCGTGTTCACTGGAATEST: gi|58674681|gb|CK063368.1|CK063368
genomic: GATAGGCTGCCTGGAGTAAGAATTGCATTTATTGGAGATGGACCATACAGgtatatcata ... tacatgacagGAGTGAGCTGGAGAAGATGTTTGAGGGGATGCCTGCCGTGTTCACTGGAAT
EST: GATAGGCTGCCTGGAGTAAGAATTGCATTTATTGGAGATGGACCATACAG GAGTGAGCTGGAGAAGATGTTTGAGGGGATGCCTGCCGTGTTCACTGGAATEST: gi|4715718|gb|AU056834.1|AU056834
genomic: GATAGGCTGCCTGGAGTAAGAATTGCATTTATTGGAGATGGACCATACAGgtatatcata ... tacatgacagGAGTGAGCTGGAGAAGATGTTTGAGGGGATGCCTGCCGTGTTCACTGGAAT
EST: AGTAAGAATTGCATTTATTGGAGATGGACCATACAG GAGTGAGCTGGNGAAAGATGTTTGAGGGGATCCCTGCCGTGTTCACTGGAAEST: gi|29617906|gb|CB622918.1|CB622918
genomic: AGTAAGAATTGCATTTATTGGAGATGGACCATACAGgtatatcata ... tacatgacagGAGTGAGCTGGAG-AAGATGTTTGAGGGGATGCCTGCCGTGTTCACTGGAA
EST: GATAGGCTGCCTGGAGTAAGAATTGCATTTATTGGAGATGGACCATACAG GAGTGAGCTGGAGAAGATGTTTGAGGGGATGCCTGCCGTGTTCACTGGAAT
genomic: GATAGGCTGCCTGGAGTAAGAATTGCATTTATTGGAGATGGACCATACAGgtatatcata ... tacatgacagGAGTGAGCTGGAGAAGATGTTTGAGGGGATGCCTGCCGTGTTCACTGGAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTAATGGATAGGCTGCCTGGAGTAAGAATTGCATTTATTGGAGATGGACCATACAGgtatatcatatgtggttccttgccattttatatactatatctttttttttcctaagcttccagtttgtcatgaacagcggcagctcaaaatttattgcat
- - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcggcag