1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ACTCCCCTCCTTCCCGGCAGAGGAGAGGAGAGGAGAGGAGAGGACTCATCCATCATCATCAATCAACGCCATGACGAGCTCCTCATCTCCTTCCCGAAAGgtattattctactccttcctctctctccccaatccgtctgattctcgctatctgtgaacgttttggtctaatttccccccctttttttttgtacctgcgcgcag
species | Oryza sativa |
transcript | LOC_Os12g44000.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CATCATCATCAATCAACGCCATGACGAGCTCCTCATCTCCTTCCCGAAAG GCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAGCTCGCCGAGTGGEST: gi|8857593|gb|AU094911.1|AU094911
genomic: CATCATCATCAATCAACGCCATGACGAGCTCCTCATCTCCTTCCCGAAAGgtattattct ... ctgcgcgcagGCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAGCTCGCCGAGTGG
EST: ATCATCAATCAACGCCATGACGAGCTCCTCATCTCCTTCCCGAAAG GCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAGCTCGCCGAGTGGEST: gi|58593809|gb|CF992117.1|CF992117
genomic: ATCATCAATCAACGCCATGACGAGCTCCTCATCTCCTTCCCGAAAGgtattattct ... ctgcgcgcagGCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAGCTCGCCGAGTGG
EST: CATCATCATCAATCAACGCCATGACGAGCGGGGGATCTCCTTCCCGAAAG GCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAGCTCGCCGAGTGGEST: gi|5851049|gb|AU078221.1|AU078221
genomic: CATCATCATCAATCAACGCCATGACGAGCTCCTCATCTCCTTCCCGAAAGgtattattct ... ctgcgcgcagGCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAGCTCGCCGAGTGG
EST: ATCATCAATCAACGCCATGACGAGCTCCTCATCTCCTTTCCCGAAAG GCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAGCTCGCCGAGTGG
genomic: ATCATCAATCAACGCCATGACGAGCTCCTCATCTCC-TTCCCGAAAGgtattattct ... ctgcgcgcagGCGCTGAGCAAGATCGCTTGCAATCGGCTGCAGAAGGAGCTCGCCGAGTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTCCCCTCCTTCCCGGCAGAGGAGAGGAGAGGAGAGGAGAGGACTCATCCATCATCATCAATCAACGCCATGACGAGCTCCTCATCTCCTTCCCGAAAGgtattattctactccttcctctctctccccaatccgtctgattctcgctatctgtgaacgttttggtctaatttccccccctttttttttgtacctgcgcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC