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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACTGGTGGAGAGATTGGGTTCAGCACCTACTTCTCGATGGCTAGGGGCAATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctttgcttccatttaagctgtctgacagtaacattttatttagatttcacattcaacattttgctaactgctgctgttgtgcctttacag

Basic information

species Oryza sativa
transcript LOC_Os12g42876.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g42876.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM2G149751_T02 (Zea mays), 5'ss of exon 2
GGACTGGTGGAGAGATTGGGTTCAGCACCTACTTCTCGATGGCTAGGGGCAATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctttgcttccatttaagctgtctgacagtaacattttatttagatttcacattcaacatttt--gctaactgctgctgttgtgcctttacag
||||||| ||||||||||| ||   |||||||||||| ||||| |||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||| |        |||  |  |  ||||  ||   || || |||   ||| || |||||  ||| ||      |||| | | |||||||
GGACTGGAGGAGAGATTGGATTTGACACCTACTTCTCCATGGCCAGGGGCAACGCCACTGTTCCTGCTATGGAGATGACCAAGTGGTTTGACACCAACTAgtgagtcctttgcct--------gctacc-aatggtaattttagtttgagcttttgtatttaatattttttgctgacaaactttgttctacttttacag

upper sequence: LOC_Os12g42876.1 (Oryza sativa), 5'ss of exon 1
lower sequence: PP1S399_19V6.3 (Physcomitrella patens), 5'ss of exon 2
GGACTGGTGGAGAGATTGGGTTCAGCACCTACTTCTCGATGGCTAGGGGCAATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctttgcttccatt-taagctgtctgacagtaacattttatttagatttcacattcaa-cattttgctaactgctgct-gttgtgcctt-tacag---------------
|||| ||||||||||||||   |      || ||||| |||||  | || ||    ||    || ||||||||||||||||||||||| || ||||||||||||||      ||||  |  | |   |||   |  |    || ||      |   |   ||||   |||||    | | |  | |||||  ||| | ||                
GGACGGGTGGAGAGATTGGACACGATGTGTATTTCTCAATGGCCCGTGGAAACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGATACCAACTAgtaagtgaccaacttcactaatcattcgtcaaccgtttgtcttctaggagactggaatcctcaaattttttgagcgcgggtcttagttgtaacttgtgcatcgtttttgcgcgcag

upper sequence: LOC_Os12g42876.1 (Oryza sativa), 5'ss of exon 1
lower sequence: PP1S27_81V6.1 (Physcomitrella patens), 5'ss of exon 2
GGACTGGTGGAGAGATTGGGTTCAGCACCTACTTCTCGATGGCTAGGGGCAATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctttgct--tccat------ttaagctgt-ctgacagtaacattt--------tatttagatttcacattcaacattttgctaactgctgctgttg-tgccttt-acag--------
|||||||||| ||||||||         |||||||||||||||  | || ||    ||    || ||||||||||||||||||||||| |||||||||||||| || |  |  |  |||||      ||    ||| |  |   || |   |        ||||| ||  |  ||| ||    || |  || |  | |||  | ||||||| |||         
GGACTGGTGGGGAGATTGGCCATGATGTCTACTTCTCGATGGCCCGTGGAAACAAGACGAAGCCCGCCATGGAGATGACCAAGTGGTTCGACACCAACTAgtatgtacaatcttgatccataacgtattttcttgtacaaatgctagcgcctgtgtaggctattttgagatttcatacagtggttggggaagtagttctgacgctgcctttgacatgttcacag

upper sequence: LOC_Os12g42876.1 (Oryza sativa), 5'ss of exon 1
lower sequence: PP1S33_110V6.2 (Physcomitrella patens), 5'ss of exon 2
GGACTGGTGGAGAGATTGGGTTCAGCACCTACTTCTCGATGGCTAGGGGCAATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagt---ccttt-----gcttccatt-taagctgtctgacagtaacattttatttagatttcacattcaacattttgctaactg-ctgctgttgtgcctttacag------
|||| ||||||||||| |||  |      ||||||||||||||| | || ||    |||   ||||||||||||||||| |||||||| ||||||||||||| |||   |||||     ||  |  || |   |||| |   | |   |  |     || |||||  ||| | | |  ||| | || |      ||  |||  | |       
GGACCGGTGGAGAGATCGGGCACGATGTGTACTTCTCGATGGCTCGCGGAAACAAGACTAAGCCTGCCATGGAGATGACGAAGTGGTTCGACACCAACTAgtgagtgtgcctttctatagcaccttttctcttctgtgtattattgtgaagtgcaggagttttcatcttccagactaagctgattgacctgaaatgaacctgaatacttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29660225|gb|CB656500.1|CB656500
EST:     AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA                         CCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: gi|29637454|gb|CB642463.1|CB642463
EST:     AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA                         CCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: gi|58663725|gb|CK052411.1|CK052411
EST:     AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA                         CCACTTTATTGTCCCTGAACTTGGTCCTAACACCAATTTCTCCTACTCTTC
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: gi|58692606|gb|CK081293.1|CK081293
EST:     AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA                         CCACTTTATTGTCCCTGAACTTGGTCCTAACACCAATTTCTCCTACTCTTC
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: gi|29631738|gb|CB636747.1|CB636747
EST:     AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA                         CCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: gi|58606784|gb|CK034817.1|CK034817
EST:     AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA                         ACACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: gi|58693681|gb|CK082368.1|CK082368
EST:     AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA                         CCACTTTATTGTCCCTGAACTTGGTCCTAACACCAATTTCTCCTACTCTTC
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: gi|29657687|gb|CB653962.1|CB653962
EST:     AATGCCACTGTCCCTGCTATGGAGATGACCAAGTGGTTTGACACCAACTA                         CCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: gi|58672742|gb|CK061428.1|CK061428
EST:     AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA                         CCACTTTATTGTCCCTGAACTTGGTCCTAACACCAATTTCTCCTACTCTTC
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: gi|29622989|gb|CB628000.1|CB628000
EST:     AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA                         CCACTTTATTGTCCCTGAACTTGGTCCTAACACCAATTTCTCCTACTCTTC
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: gi|33798694|gb|CF325205.1|CF325205
EST:     AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA                         CCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: gi|88377660|gb|CI605495.1|CI605495
EST:     AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA                         CCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTTCTACTCTTC
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: gi|58606439|gb|CK034472.1|CK034472
EST:     AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA                         CCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: gi|58674086|gb|CK062772.1|CK062772
EST:     AATGCCACTGTCCCTGCTATGGAGATGACCAAGTGGTTTGACACCAACTA                         CCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: gi|58662489|gb|CK051175.1|CK051175
EST:     AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA                         CCACTTTATTGTCCCTGAACTTGGTCCTAACACCAATTTCTCCTACTCTTC
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: gi|58662730|gb|CK051416.1|CK051416
EST:     AATGCCACTGTCCCCGCCATGGAGATGACCAAGTGGTTTGACACCAACTA                         CCACTTTATTGTCCCTGAACTTGGTCCTAACACCAATTTCTCCTACTCTTC
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: gi|13806667|gb|AU181625.1|AU181625
EST:     AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA                         CCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTTCTACTCTTC
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: gi|58586228|gb|CF984536.1|CF984536
EST:     AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA                         CCACTTTATTGTCCCTGAACTTGGTCCTAACACCAATTTCTCCTACTCTTC
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: gi|58667161|gb|CK055847.1|CK055847
EST:     AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA                         CCACTTTATTGTCCCTGAACTTGGTCCTAACACCAATTTCTCCTACTCTTC
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: gi|58597101|gb|CK007629.1|CK007629
EST:     AATGCCACTGTCCCTGCTATGGAGATGACCAAGTGGTTTGACACCAACTA                         CCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: gi|58591916|gb|CF990224.1|CF990224
EST:     AATGCCACTGTCCCTGCTATGGAGATGACCAAGTGGTTTGACACCAACTA                         CCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: gi|88360093|gb|CI610207.1|CI610207
EST:     AATGCCACTGTCCCTGCTATGGAGATGACCAAGTGGTTTGACACCAACTA                         CCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: gi|29629761|gb|CB634770.1|CB634770
EST:     AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA                         CCACTTTATTGTCCCTGAACTTGGTCCTAACACCAATTTCTCCTACTCTTC
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: gi|29632460|gb|CB637469.1|CB637469
EST:     AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA                         CCACTTTATCGTTCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: gi|58664322|gb|CK053008.1|CK053008
EST:     GTGGTTTGACACCAACTA                         CCACTTTATTGTCCCTGAACTTGGTCCTAACACCAATTTCTCCTACTCTTC
genomic: GTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: gi|145758276|gb|ES351708.1|ES351708
EST:     AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA                         CCACTTTATTGTCCCTGAACTTGGTCCTAACACCAATTTCTCCTACTCTTC
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: gi|58598413|gb|CK008941.1|CK008941
EST:     AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA                         CCACTTTATTGTCCCTGAACTTGGTCCTAACACCAATTTCTCCTACTCTTC
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: gi|58670927|gb|CK059613.1|CK059613
EST:     AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA                         CCACTTTATTGTCCCTGAACTTGGTCCTAACACCAATTTCTCCTACTCTTC
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: gi|58672843|gb|CK061529.1|CK061529
EST:     AATGCCACTGTCCCTGCTATGGAGATGACCAAGTGGTTTGACACCAACTA                         CCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: gi|58664010|gb|CK052696.1|CK052696
EST:     AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA                         CCACTTTATTGTCCCTGAACTTGGTCCTAACACCAATTTCTCCTACTCTTC
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: gi|58668480|gb|CK057166.1|CK057166
EST:     AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA                         CCACTTTATTGTCCCTGAACTTGGTCCTAACACCAATTTCTC
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTC
EST: gi|58658015|gb|CK046695.1|CK046695
EST:     AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA                         CCACTTTATTGTCCCTGAACTTGGTCCTAACACCAATTTCTCCTACTCTTC
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: gi|58662412|gb|CK051098.1|CK051098
EST:     AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA                         CCACTTTATTGTCCCTGAACTTGGTCCTAACACCAATTTCTCCTACTCTTC
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: gi|11026095|gb|AU162696.1|AU162696
EST:     TGCCACTGTCCCTGGCCATGGAGATGACCAAGTGGTTTGGACACCAACTA                         CCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
genomic: TGCCACTGTCCCTG-CCATGGAGATGACCAAGTGGTTTG-ACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC
EST: gi|58673804|gb|CK062490.1|CK062490
EST:     AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTA                         CCACTTTATTGTCCCTGAACTTGGTCCTAACACCAATTTCTCCTACTCTTC
genomic: AATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 75 (downstream exon)
Score: 231

GGACTGGTGGAGAGATTGGGTTCAGCACCTACTTCTCGATGGCTAGGGGCAATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctt ... gcctttacagCCACTTTATCGTCCCTGAACTTGGTCCCAACACCAAGTTCTCCTACTCTTCCCACAAGGCTGTGAATGAATACAAGGAGGCTAAGGCG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGACTGGTGGAGAGATTGGGTTCAGCACCTACTTCTCGATGGCTAGGGGCAATGCCACTGTCCCTGCCATGGAGATGACCAAGTGGTTTGACACCAACTAgtaagtcctttgcttccatttaagctgtctgacagtaacattttatttagatttcacattcaacattttgctaactgctgctgttgtgcctttacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATG